This similarity search uses Blast suit to perform alignment for the provided query sequence with selected datasets. There are choices for selection of dataset and program as per query requirement. Nucleotide datasets (Complete Gene, mRNA and CDS) of hypoxia response genes reported in fishes can be selected as target for DNA query sequence and alignment can be generated using Blastn program. Protein dataset can be used to generate sequence alignment for protein query using Blastp program and for DNA query using Blastx program.

Program:  Select a Blast program for query     Blastp Blastn Blastx Parameters:   Word size        Maximum number of alignments        Minimum percent identity  Dataset:  Select dataset to be aligned with query    Gene Genomic mRNA RefSeq mRNA Upstreamdb Protein   Select query type Nucleotide Protein      Paste sequence in FASTA format