A database of hypoxia responsive genes in fishes
  mRNA-to-Genome alignments using Spidey

Spidey
  • The spidey program computes mRNA-to-Genome alignments.
  • The spliced coding sequence or ESTs cluster can be used to identify gene information.
Genomic sequence input
Upload a genomic sequence file

          OR

Provide genomic sequence (Gene sequence in FASTA format )

Set target length on genomic sequence:  From:       To:

mRNA sequence input
Upload a mRNA sequence file
          OR
Provide input sequence (mRNA sequences in FASTA format)
 

Divergent sequences

Use large intron sizes
Minimum mRNA-genomic identity %
Minimum length of mRNA covered %
Option Parameters

Genomic sequence is:

Vertebrate
Drosophila
C. elegans
Plant

Output options:

Text/summary
Summary only
ASN.1
Print multiple alignment
 
     

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