A resource on hypoxia responsive genes in fish
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Upstream Analysis
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Upstream analysis
This program uses an upstream sequence of a hypoxia responsive gene for the analysis.
The query sequence either may be user provided input sequence or a selected gene from the HRGfish database
Program computes the frequency of CG motifs, CpG island and HRE sites in the query sequence.
Program proceeds further to align the query sequence with reference promoter of orthologous gene to find out the conserve pattern.
Select query:
Sequence from HRGFish
User supplied Sequence
Species list:
Select fish species
Acanthochromis polyacanthus
Amphiprion ocellaris
Anabas testudineus
Astatotilapia calliptera
Astyanax mexicanus
Austrofundulus limnaeus
Boleophthalmus pectinirostris
Callorhinchus milii
Carassius auratus
Clupea harengus
Cynoglossus semilaevis
Cyprinodon variegatus
Cyprinus carpio
Danio rerio
Electrophorus electricus
Esox lucius
Fundulus heteroclitus
Gasterosteus aculeatus
Gouania willdenowi
Haplochromis burtoni
Hippocampus comes
Ictalurus punctatus
Kryptolebias marmoratus
Labrus bergylta
Larimichthys crocea
Lates calcarifer
Latimeria chalumnae
Lepisosteus oculatus
Mastacembelus armatus
Maylandia zebra
Monopterus albus
Neolamprologus brichardi
Nothobranchius furzeri
Notothenia coriiceps
Oncorhynchus kisutch
Oncorhynchus mykiss
Oncorhynchus tshawytscha
Oreochromis niloticus
Oryzias latipes
Oryzias melastigma
Pangasianodon hypophthalmus
Paralichthys olivaceus
Parambassis ranga
Paramormyrops kingsleyae
Perca flavescens
Poecilia formosa
Poecilia latipinna
Poecilia mexicana
Poecilia reticulata
Pundamilia nyererei
Pygocentrus nattereri
Rhincodon typus
Salmo salar
Salvelinus alpinus
Scleropages formosus
Seriola dumerili
Seriola lalandi dorsalis
Sinocyclocheilus anshuiensis
Sinocyclocheilus grahami
Sinocyclocheilus rhinocerous
Stegastes partitus
Tachysurus fulvidraco
Takifugu rubripes
Xiphophorus couchianus
Xiphophorus maculatus
Paste an upstream query sequence in FASTA format
Example sequence
Select subsequence region for analysis: Start
End
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