A database of hypoxia responsive genes in fishes
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Gene Information
Upstream Analysis
Pattern analysis
HRE analysis
Sequence Analysis
Similarity search
mRNA alignment
Finding ORFs
Primer design
Multiple sequence alignment
About Database
ORF finding in the query sequence using GetORF program
This program produced open reading frame for provided input genomic sequence.
Upload a gene sequence file
OR
Provide gene sequence
( in FASTA format )
Output finding with defined region:
0 Translation of regions between STOP codons
1 Translation of regions between START and STOP codons
2 Nucleic sequences between STOP codons
3 Nucleic sequences between START and STOP codons
4 Nucleotides flanking START codons
5 Nucleotides flanking initial STOP codons
6 Nucleotides flanking ending STOP codons
Minimum nucleotide size of ORF to report (numeric)
Maximum nucleotide size of ORF to report (numeric)
Length of flanking nucleotides to report
150
100
50
Output file format
Pearson FASTA
GCG
EMBL
SwissProt
NCBI FASTA
NBRF (PIR)
GENBANK
CODATA
DNA strider
ACeDB
Staden experiment
plain text
Fitch
GCG MSF
Clustal .aln
PHYLIP
Hennig86
Mega
Meganon
Nexus/PAUP
Nexusnon/PAUPnon
Jackknifer
Jackknifernon
Treecon
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