A database of hypoxia responsive genes in fishes
  Gene details for the gene Cadherin 5 (Gene Id: 445471  Symbol: cdh5)

Danio rerio     [Zebra danio, Zebrafish, Anju]     Family:Cyprinidae    Habitat: Freshwater    Conservation status (2015): Least Concern (LC)
Occurrence and distribution Native: India, Bangladesh, Pakistan, Myanmar, Bhutan, Nepal
Introduced: Japan, Sri Lanka, Philippines, USA, Colombia, Martinique
Systematics Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Salmophasia.
Refseq information: 1
SNo. Status RNA nucleotide accession Protein accession Genomic nucleotide accession Start position on genomic DNA End position on genomic DNA Orientation Assembly Symbol UniProtkb ID
1 PROVISIONAL NM_001003983.1 NP_001003983.1 NC_007118.7 44445594 44467881  (22287) + Reference GRCz1 cdh5 Q68SP4
 
mRNA analysis Promoter analysis of gene: Primere design of mRNA:
Similarity search : Analysis of homologous transcript:
 
PubMed links
12477932 15305301 15802528 15849270 16193492 16251212 16321372 16336046 16469878 16719917 17043243 17125762 17409396 17531218 17646580 17722983 17911384 18032732 18094332 18292601 18342303 18832752 18835554 19093037 19151727 19308258 19345098 19503615 19504456 19542019 19590046 20098718 20154733 20364122 20549745 20736288 21389051 21429983 21429985 21641336 21654806 21750034 21802375 21865323 21873635 21896630 22007135 22079115 22119054 22227723 22438865 22516065 22581286 22634317 22649102 22668851 22750409 22837470 23000899 23285103 23341543 23418350 23456338 23520166 23575676 23698350 23719382 23763948 23863480 23959107 24008197 24021482 24146748 24247081 24277077 24306108 24603875 24699544 24767999 24806444 24823359 24905975 25027310 25056693 25100833 25104355 25214579 25373898 25428693 25450186 25564648 25584798 25722433 25739401 25884426 25931248 25969392 25992545 26017639 26051280 26092845 26150473 26153247 26174808 26253536 26257178 26358189 26369932 26385351 26469318 26476142 26650936 26657775 26671342 26814702 27094430 27156384 27158029 27499523 27549025 27562099 27581547 27637381 27638855 27799363 28003365 28007601 28082451 28087636 28112401 28242613 28264837 28279709 28300168 28372831 28394883 28429770 28459441 28576875 28598490 28602865 28619820 28878000 29037991 29123087 29168762 29232705 29284606 29364115 29414790 29651289 29724820 29744287 29757409 29905858 30006544 30188605 30309860 30451830
 
GO Term: 38
SNo.Reported in speceisEvidenceQualifierGO termCategory PubMed Link
1Danio rerioIBA-cell morphogenesisProcess21873635
2Danio rerioIGI-vasculature developmentProcess28112401
3Danio rerioIEA-blood vessel maturationProcessNot available
4Danio rerioIBA-sprouting angiogenesisProcess21873635
5Danio rerioIMP-sprouting angiogenesisProcess19345098
6Danio rerioIBA-calcium ion bindingFunction21873635
7Danio rerioIEA-calcium ion bindingFunctionNot available
8Danio rerioIBA-plasma membraneComponent21873635
9Danio rerioIEA-plasma membraneComponentNot available
10Danio rerioIBA-cell-cell adherens junctionComponent21873635
11Danio rerioIBA-cell-cell junction assemblyProcess21873635
12Danio rerioIEA-cell adhesionProcessNot available
13Danio rerioIBA-homophilic cell adhesion via plasma membrane adhesion moleculesProcess21873635
14Danio rerioIEA-homophilic cell adhesion via plasma membrane adhesion moleculesProcessNot available
15Danio rerioIBA-heart developmentProcess21873635
16Danio rerioIMP-heart developmentProcess20098718
17Danio rerioIBA-cytoskeletal protein bindingFunction21873635
18Danio rerioIMP-unidimensional cell growthProcess25373898
19Danio rerioIBA-cell surfaceComponent21873635
20Danio rerioIEA-membraneComponentNot available
21Danio rerioIEA-integral component of membraneComponentNot available
22Danio rerioIBA-calcium-dependent cell-cell adhesion via plasma membrane cell adhesion moleculesProcess21873635
23Danio rerioIBA-catenin complexComponent21873635
24Danio rerioIMP-negative regulation of angiogenesisProcess19345098
25Danio rerioIBA-adherens junction organizationProcess21873635
26Danio rerioIBA-protein homodimerization activityFunction21873635
27Danio rerioIBA-cell-cell adhesion mediated by cadherinProcess21873635
28Danio rerioIBA-cadherin bindingFunction21873635
29Danio rerioIEA-metal ion bindingFunctionNot available
30Danio rerioIMP-cerebellum vasculature developmentProcess28429770
31Danio rerioIMP-blood vessel lumenizationProcess20736288
32Danio rerioIBA-cell-cell adhesionProcess21873635
33Danio rerioIEA-cell-cell adhesionProcessNot available
34Danio rerioIMP-angiogenic sprout fusionProcess28264837
35Danio rerioIGI-cell adhesion involved in sprouting angiogenesisProcess28264837
36Danio rerioIGI-regulation of vasculature developmentProcess29744287
37Danio rerioIMP-blood vessel endothelial cell delamination involved in blood vessel lumen ensheathmentProcess23698350
38Danio rerioIMP-endothelial tube lumen extension involved in blood vessel lumen ensheathmentProcess23698350

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