A database of hypoxia responsive genes in fishes
 
  Gene details for the gene Cadherin 5 (Gene Id: 108934713  Symbol: cdh5)

Scleropages formosus     [Asian bonytongue, Ikan siluk ]     Family:Osteoglossidae    Habitat: Freshwater    Conservation status (2015): Endangered (EN)
Occurrence and distribution Native: Indonesia, Malaysia, Thailand, Vietnam, Myanmar, Cambodia
Introduced: Philippines, Singapore
Systematics Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae.
Refseq information: 1
SNo. Status RNA nucleotide accession Protein accession Genomic nucleotide accession Start position on genomic DNA End position on genomic DNA Orientation Assembly Symbol UniProtkb ID
1 MODEL XM_018752772.2 XP_018608288.2 NC_041816.1 7216572 7234247  (17675) - Reference fSclF cdh5 A0A1W5A4T1
 
mRNA analysis Promoter analysis of gene: Primere design of mRNA:
Similarity search : Analysis of homologous transcript:
 
 
GO Term: 35
SNo.Reported in speceisEvidenceQualifierGO termCategory PubMed Link
1Danio rerioIBAinvolved_icell morphogenesisProcess21873635
2Danio rerioIBAinvolved_ivasculature developmentProcess21873635
3Danio rerioIGIacts_upstrvasculature developmentProcess28112401
4Danio rerioIEAacts_upstrblood vessel maturationProcessNot available
5Danio rerioIMPacts_upstrsprouting angiogenesisProcess19345098
6Danio rerioIBAenablescalcium ion bindingFunction21873635
7Danio rerioIEAenablescalcium ion bindingFunctionNot available
8Danio rerioIEAlocated_inplasma membraneComponentNot available
9Danio rerioIBAis_active_adherens junctionComponent21873635
10Danio rerioIBAis_active_bicellular tight junctionComponent21873635
11Danio rerioIBAinvolved_icell-cell junction assemblyProcess21873635
12Danio rerioIEAacts_upstrcell adhesionProcessNot available
13Danio rerioIEAacts_upstrhomophilic cell adhesion via plasma membrane adhesion moleculesProcessNot available
14Danio rerioIBAinvolved_imulticellular organism developmentProcess21873635
15Danio rerioIMPacts_upstrheart developmentProcess20098718
16Danio rerioIMPacts_upstrunidimensional cell growthProcess25373898
17Danio rerioIEAlocated_inmembraneComponentNot available
18Danio rerioIEAlocated_inintegral component of membraneComponentNot available
19Danio rerioIBAinvolved_icalcium-dependent cell-cell adhesion via plasma membrane cell adhesion moleculesProcess21873635
20Danio rerioIBApart_ofcatenin complexComponent21873635
21Danio rerioIMPacts_upstrnegative regulation of angiogenesisProcess19345098
22Danio rerioIBAinvolved_iadherens junction organizationProcess21873635
23Danio rerioIMPacts_upstrcell-cell junction organizationProcess30171187
24Danio rerioIBAenablescadherin bindingFunction21873635
25Danio rerioIEAenablesmetal ion bindingFunctionNot available
26Danio rerioIMPacts_upstrcerebellum vasculature developmentProcess28429770
27Danio rerioIMPacts_upstrblood vessel lumenizationProcess20736288
28Danio rerioIEAacts_upstrcell-cell adhesionProcessNot available
29Danio rerioIBAinvolved_icell-cell adhesion via plasma-membrane adhesion moleculesProcess21873635
30Danio rerioIMPacts_upstrangiogenic sprout fusionProcess28264837
31Danio rerioIGIacts_upstrcell adhesion involved in sprouting angiogenesisProcess28264837
32Danio rerioIGIacts_upstrregulation of vasculature developmentProcess29744287
33Danio rerioIMPacts_upstrblood vessel endothelial cell delamination involved in blood vessel lumen ensheathmentProcess23698350
34Danio rerioIMPacts_upstrendothelial tube lumen extension involved in blood vessel lumen ensheathmentProcess23698350
35Danio rerioIBAinvolved_iregulation of establishment of cell polarityProcess21873635

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