A database of hypoxia responsive genes in fishes
  Gene details for the gene Cadherin 5 (Gene Id: 101070964  Symbol: cdh5)

Takifugu rubripes     [Japanese pufferfish]     Family:Tetraodontidae    Habitat: Saltwater and freshwater    Conservation status (2015): Not Reported
Occurrence and distribution Native: China, Japan, Taiwan, South Korea, North Korea, Russia
Questionable: Philippines
Systematics Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae.
Refseq information: 1
SNo. Status RNA nucleotide accession Protein accession Genomic nucleotide accession Start position on genomic DNA End position on genomic DNA Orientation Assembly Symbol UniProtkb ID
1 MODEL XM_011603072.1 XP_011601374.1 NC_018893.1 6098570 6122581  (24011) - Reference FUGU5 cdh5 -
 
mRNA analysis Promoter analysis of gene: Primere design of mRNA:
Similarity search : Analysis of homologous transcript:
 
 
GO Term: 38
SNo.Reported in speceisEvidenceQualifierGO termCategory PubMed Link
1Danio rerioIBA-cell morphogenesisProcess21873635
2Danio rerioIGI-vasculature developmentProcess28112401
3Danio rerioIEA-blood vessel maturationProcessNot available
4Danio rerioIBA-sprouting angiogenesisProcess21873635
5Danio rerioIMP-sprouting angiogenesisProcess19345098
6Danio rerioIBA-calcium ion bindingFunction21873635
7Danio rerioIEA-calcium ion bindingFunctionNot available
8Danio rerioIBA-plasma membraneComponent21873635
9Danio rerioIEA-plasma membraneComponentNot available
10Danio rerioIBA-cell-cell adherens junctionComponent21873635
11Danio rerioIBA-cell-cell junction assemblyProcess21873635
12Danio rerioIEA-cell adhesionProcessNot available
13Danio rerioIBA-homophilic cell adhesion via plasma membrane adhesion moleculesProcess21873635
14Danio rerioIEA-homophilic cell adhesion via plasma membrane adhesion moleculesProcessNot available
15Danio rerioIBA-heart developmentProcess21873635
16Danio rerioIMP-heart developmentProcess20098718
17Danio rerioIBA-cytoskeletal protein bindingFunction21873635
18Danio rerioIMP-unidimensional cell growthProcess25373898
19Danio rerioIBA-cell surfaceComponent21873635
20Danio rerioIEA-membraneComponentNot available
21Danio rerioIEA-integral component of membraneComponentNot available
22Danio rerioIBA-calcium-dependent cell-cell adhesion via plasma membrane cell adhesion moleculesProcess21873635
23Danio rerioIBA-catenin complexComponent21873635
24Danio rerioIMP-negative regulation of angiogenesisProcess19345098
25Danio rerioIBA-adherens junction organizationProcess21873635
26Danio rerioIBA-protein homodimerization activityFunction21873635
27Danio rerioIBA-cell-cell adhesion mediated by cadherinProcess21873635
28Danio rerioIBA-cadherin bindingFunction21873635
29Danio rerioIEA-metal ion bindingFunctionNot available
30Danio rerioIMP-cerebellum vasculature developmentProcess28429770
31Danio rerioIMP-blood vessel lumenizationProcess20736288
32Danio rerioIBA-cell-cell adhesionProcess21873635
33Danio rerioIEA-cell-cell adhesionProcessNot available
34Danio rerioIMP-angiogenic sprout fusionProcess28264837
35Danio rerioIGI-cell adhesion involved in sprouting angiogenesisProcess28264837
36Danio rerioIGI-regulation of vasculature developmentProcess29744287
37Danio rerioIMP-blood vessel endothelial cell delamination involved in blood vessel lumen ensheathmentProcess23698350
38Danio rerioIMP-endothelial tube lumen extension involved in blood vessel lumen ensheathmentProcess23698350

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