Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Motif search

This program enables to search for  a microsatellite sequence  comprising of a motif of particular repeats from the database based on the selected parameters.

Three types of microsatellite repeats are found in a sequence:

  • Simple repeats contains only one type of repeats.
    e.g. Sequence: .....GTACGCCGTA(GC)15GTCATGCCGA.....
  • Composite repeats contains combination of two or more  type of repeats.
    e.g. Sequence: .....GTACGCCGTA(GT)10(CT)5(CA)6GTCATGCCGA.....
  • Complex repeats contains more than one type of repeats at different sites.
    e.g. Sequence: .....GTACGCCGTA(GT)10AGTCGGCCGTAGCT(CTGT)5TGAGCCGTAGAAGCC(CAGTA)3GTCATGCCGA.....
Search program
Motif  Length  Repeats type   
 
 
 
 
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