Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Bagridae9
Cichlidae 9
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats statistics

The program finds the frequency of different type of repeats from the records available in FishMicrosat and displays in the tabular and pie chart form.

Maximum repeats types AC 19793 | TG 16047 | CA 15018

Mono nucleotide repeatsDi nucleotide repeatsTri nucleotide repeats
Tetra nucleotide repeatsPenta nucleotide RepeatsHexa nucleotide repeats
 
RepeatsFrequencyRepeatsFrequency
TGTCTG
14
GTGTGC
10
AGAAAG
8
GATGAA
8
CACACT
8
CCCTAA
8
AAAAAT
6
AAAATA
6
TTTTAT
6
ACACAT
6
ATATAC
6
CACACG
6
GTGTCT
4
TATATG
4
TAAAAA
4
GTGCGT
4
ACATAT
4
CCTGGT
4
AGAGAA
4
GAGGAA
4
AATCAG
4
TAAATA
4
AAGGAC
4
CTTATT
4
CATCTT
4
TACATA
4
ATAATG
4
TTTATT
4
GAGTGC
2
GAGATA
2
CATCGT
2
CATCAC
2
GTCTCT
2
ACACAG
2
CAGAAC
2
GGAGAG
2
GGATAG
2
AGACAG
2
TTAGGG
2
TCACCA
2
GTGTCC
2
ACAAGA
2
AGAAGG
2
CTCTCG
2
ATCAGG
2
CATATA
2
AATCAT
2
CATTAT
2
GTCTGC
2
TTCAGA
2
GCTCCG
2
ATTTTT
2
CTCGCA
2
GAACCT
2
TATAGT
2
GTACTT
2
AATGTC
2
ACAGAG
2
GAGAGT
2
CAGCTG
2
AGTGTA
2
GTGTGG
2
CATACA
2
CCAGCA
2
TAAATG
2
GAATCT
2
TTTTCG
2
CAGACA
2
AAACTT
2
CATCAA
2
TATACA
2
TATGTG
2
ATACTT
2
AATTAA
2
GTGAAA
2
CGCACA
2
TCAGAA
2
CTAGTC
2
TCTGGT
2
TCTATC
2
AGTCAG
2
TCCCTC
2
CTCCTT
2
TTAGCT
2
CCTAAC
2
TCTCTT
2
ATTTAT
2
CTAATG
2
AATATG
2
TGCCTC
2
GCGGTG
2
CTTCAT
2
CTCACT
2
AGGAGA
2
AGGAAG
2
ACCCTA
2
CTTTGT
2
GGAGGA
2
AGAACC
2
AGTTCA
2
CAAGTA
2
TCATTA
2
ATAAAC
2
GAAAGA
2
GTGGAA
2
GTGAGA
2
GTCAAG
2
TTCTCT
2
ATTCCC
2
GAACTT
2
TATTAA
2
GGGAGA
2
AGGGTT
2
ATAAAA
2
TCTATA
2
TGAGGA
2
GAAAGT
2
GTGAGT
2
AAAACA
2
TATTAG
2
TATATT
2
TATTTG
2
TAATTT
2
TCTTTC
2
CGATGG
2
AAAGAA
2
CCCCGT
2
TTTATA
2
AGTTTA
2
AAAGTG
2
ACATAC
2
ATATAA
2
CTCTGT
2
TAGGTT
2
AAGCGT
2
TGCGGT
2
GTAAAT
2
AGGCAG
2
AATAAC
2
TCTTAG
2
AGATAG
2
AATTGT
2
ATATTT
2
AGGACC
2
ATACAT
2
GCGTGT
2
CATTTA
2
AATGGG
2
AGCCGG
2
TTTTTA
2
TCTCTG
2
CAGGAC
2
TCATCT
2
GAGTAG
2
ATATAG
2
TATAGA
2
TTTGAA
2
TGACTT
2
CACGCA
2
TGAATC
2
ATTTAC
2
TGTGCT
2
ATAACT
2
GGGGCT
2
 
This pie chart repersents maximum frequencies of all types (mono, di, tri, tetera, penta and hexa) nucleotide repeats.

 
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