Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Bagridae9
Cichlidae 9
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats statistics

The program finds the frequency of different type of repeats from the records available in FishMicrosat and displays in the tabular and pie chart form.

Maximum repeats types AC 19793 | TG 16047 | CA 15018

Mono nucleotide repeatsDi nucleotide repeatsTri nucleotide repeats
Tetra nucleotide repeatsPenta nucleotide RepeatsHexa nucleotide repeats
 
RepeatsFrequencyRepeatsFrequency
TTTTA
140
TATTA
128
AAAAT
126
ATAAT
116
AAATA
114
TAAAA
108
ATTAT
108
ATATA
98
TAATA
90
TTTAT
88
AATAA
82
TATAT
80
TATTT
76
ATTTT
76
TTATT
74
AAATT
74
TTATA
70
ATATT
70
TATAA
68
ATAAA
58
AATAT
58
TATTC
48
TTCTA
46
AGAAT
44
TAGAA
42
TTTTG
42
ATTCT
40
AAAAC
40
GAATA
36
AATAG
36
TTATG
32
TCTAT
32
TTTAA
30
ATTAA
30
AATTA
28
TTTCT
26
ATTAG
24
CTATT
24
TTAAA
22
ATAGA
22
CTTTT
20
AAGAA
20
CAAAA
20
ATTTA
20
TTAGA
18
GTTTT
18
GAAGA
18
TTTAG
18
TTTGT
18
AATTT
16
AAAAG
16
TCTCT
16
ACAAA
16
AGAGG
16
TTTTC
16
AATCT
16
AAAGA
16
TTGAA
16
AGAGA
16
TGTTA
14
TAGTA
14
TTGTT
14
TAAAT
14
ATAAC
14
AAGTC
14
GAAAA
14
AAACA
14
GAGAA
14
TTAAT
12
AACAT
12
ATTCA
12
AGAAA
12
CTCTC
12
TACTA
12
TCTTC
12
ATATG
12
CTCTT
12
TATGT
12
TTGTA
10
TTCTT
10
AACAA
10
TTCTC
10
AGTAT
10
GAGGA
10
TCAAG
10
TTTCA
10
ATATC
10
ATGTT
10
TCTTT
10
AACTG
10
TGACT
8
TAATT
8
ATCTA
8
TCAAT
8
GACTT
8
AGGTT
8
ATAGT
8
CCTTT
8
AACTA
8
TCTCC
8
TATAC
8
AAAGG
8
TAGTT
8
ACGAC
8
GATAT
8
CATAT
8
ATTTC
8
GTTAT
8
AGAAG
8
AGATT
8
ACAAC
6
GATGA
6
AAATG
6
CAAGT
6
ACTAA
6
AATTG
6
TTTGC
6
GTGGT
6
TTCTG
6
GTTCA
6
GAGAG
6
TGTTC
6
TCCTC
6
AACAC
6
TGTTT
6
TTATC
6
CTTCT
6
TGAAT
6
AAGAG
6
ATGTA
6
ACATA
6
CAAAG
6
CAAAT
6
AGTCA
6
AAACT
6
AGGAA
6
AGGAG
4
CTAAA
4
TAAGA
4
CTTTC
4
CTATA
4
AATCA
4
AGTTT
4
TATTG
4
AATGA
4
TAATG
4
CTTTA
4
ATGAA
4
TCAAA
4
GATTT
4
TTACA
4
ATACT
4
GGAGA
4
GTGAA
4
CTCCT
4
CCTCT
4
TAAAC
4
CTTGC
4
TCCTT
4
AGATG
4
TATAG
4
ACAGG
4
TCAAC
4
TATGG
4
GTTAC
4
TGTGT
4
TGATA
4
AATGT
4
ACGTG
4
CAGAC
4
AGACA
4
GTTTA
4
AAGTG
4
ATTTG
4
GATGT
4
TAATC
4
CTGTT
4
AAATC
4
GAATG
4
TCATG
4
GAACA
4
CATTG
4
CACTT
4
AGGCA
4
TATGA
4
TTAGT
4
TCTCA
4
GGGAA
4
TGAAG
4
AGACG
4
ATCAC
4
TTGAC
4
TGCTT
4
CAAGG
2
TTGAT
2
GATCT
2
AAGGC
2
GACAT
2
CTAAC
2
TGCAA
2
TTTCC
2
GCGGG
2
AAGCT
2
GACGT
2
CTGAA
2
GGCAG
2
AGTTG
2
ACGTA
2
CCTCA
2
TAACA
2
TCATT
2
GCCGG
2
GATTA
2
TAGAT
2
CTGTC
2
GAACC
2
GAAGG
2
CTCAC
2
AACCT
2
TGAGT
2
TATGC
2
TTGCT
2
TAAGT
2
TCCAT
2
ATGGA
2
AGGAC
2
GCTCG
2
AATAC
2
TACGT
2
GTCAA
2
CAGGA
2
GTTCT
2
TCGTG
2
AGATC
2
TAACG
2
ATGCA
2
ATGAC
2
ACACG
2
TACTG
2
GCCTG
2
GTATC
2
CGTCT
2
GGGAG
2
ACACT
2
ATCAT
2
CGTCG
2
TGATT
2
GTGAC
2
TAGAG
2
ACGGC
2
GATGC
2
ATTAC
2
ATTGA
2
GTGTT
2
TCGTA
2
TGGAG
2
TGCTG
2
AGACT
2
TGTAT
2
CCCCT
2
TACCT
2
AGCCG
2
GAGAT
2
CAATT
2
CACAA
2
AGTTC
2
CTCCA
2
ATTGT
2
AGAAC
2
GAGAC
2
GTAAA
2
TGTTG
2
AGTGT
2
TGTCC
2
AAGGA
2
TTCCT
2
ATGTC
2
AACCA
2
TTTGA
2
CCAGT
2
TTAGC
2
AGGGA
2
ACCGA
2
ATGAT
2
TTACT
2
GGGAC
2
GGCAA
2
GAATT
2
ATGGC
2
GGTTC
2
GTGTA
2
AGCAG
2
GATCA
2
CTATC
2
TATCG
2
GCCTT
2
TCTGG
2
ATCCA
2
GGAGG
2
AACAG
2
CAAAC
2
TAGGA
2
TACTC
2
CAGAA
2
AATTC
2
GATAA
2
TTCAT
2
ATAGG
2
GGACT
2
TCTAA
2
AAGAT
2
ACCAG
2
TGTGC
2
AAAGT
2
ACAGA
2
ACACA
2
GAGGC
2
GATAC
2
CACAT
2
CCCCG
2
TTACC
2
CTCTA
2
AAGCA
2
GTATT
2
TTCAA
2
CTCAA
2
TACCC
2
TAGGC
2
CCTAT
2
TATCA
2
TCTTG
2
AAAGC
2
ATGCT
2
TTGCC
2
TGGTG
2
TCTGT
2
CATTA
2
 
This pie chart repersents maximum frequencies of all types (mono, di, tri, tetera, penta and hexa) nucleotide repeats.

 
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