Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Awaous guamensis [10]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
HQ3939641Trinucleotide(ACA)1339268..306535  bpPrimer
HQ3939661Tetranucleotide(CATC)520309..328626  bpPrimer
HQ3939671Tetranucleotide(ACAT)62491..114399  bpPrimer
HQ3939731Dinucleotide(AG)102063..82517  bpPrimer
HQ3939732Tetranucleotide(TCTA)624323..346517  bpPrimer
HQ3939721Dinucleotide(AG)714129..142471  bpPrimer
HQ3939722Tetranucleotide(ATCT)936262..297471  bpPrimer
HQ3939711Tetranucleotide(ATAG)832282..313516  bpPrimer
HQ3939651Tetranucleotide(ATGG)624164..187484  bpPrimer
HQ3939701Tetranucleotide(TAGA)832235..266593  bpPrimer
HQ3939681Tetranucleotide(TAGA)728247..274403  bpPrimer
HQ3939691Tetranucleotide(AGAT)624408..431661  bpPrimer
 
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