Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Lateolabrax maculatus [3]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EF0109581Dinucleotide(GT)1224187..210897  bpPrimer
EF0109582c*(GTG)5(G)11*25215..239897  bpPrimer
EF0109583Dinucleotide(GA)612367..378897  bpPrimer
EF0109584Dinucleotide(GA)918381..398897  bpPrimer
EF0109585Mononucleotide(G)1313801..813897  bpPrimer
EF0109541Composite(GT)9(GA)1446230..275888  bpPrimer
EF0109542Dinucleotide(TG)1122470..491888  bpPrimer
EF0109511Dinucleotide(GA)816106..121556  bpPrimer
EF0109512Dinucleotide(CA)1326283..308556  bpPrimer
 
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