Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Lepturacanthus savala [65]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
MF1527491Dinucleotide(GA)183659..94394  bpPrimer
MF1527641Trinucleotide(GAT)515152..166323  bpPrimer
MF1527642Trinucleotide(AGA)618301..318323  bpPrimer
MF1527451Dinucleotide(AG)153087..116416  bpPrimer
MF1527521Dinucleotide(GT)918301..318402  bpPrimer
MF1527441Dinucleotide(GT)1020154..173428  bpPrimer
MF1527501Dinucleotide(GT)1224158..181456  bpPrimer
MF1527421Dinucleotide(CA)2040214..253458  bpPrimer
MF1527651Trinucleotide(AAT)618301..318404  bpPrimer
MF1527471Dinucleotide(TG)1020301..320406  bpPrimer
MF1527631Trinucleotide(ATA)618251..268442  bpPrimer
MF1527671Trinucleotide(GGA)515128..142421  bpPrimer
MF1527581Trinucleotide(GGA)515126..140440  bpPrimer
MF1527621Trinucleotide(ATA)824128..151431  bpPrimer
MF1527591Trinucleotide(CCT)515187..201443  bpPrimer
MF1527561Dinucleotide(CA)918194..211481  bpPrimer
MF1527411Dinucleotide(CA)1326192..217474  bpPrimer
MF1527541Dinucleotide(AC)1632119..150450  bpPrimer
MF1527481Dinucleotide(TG)1020301..320423  bpPrimer
MF1527571Trinucleotide(ATC)515199..213423  bpPrimer
MF1527681Trinucleotide(TCC)618247..264488  bpPrimer
MF1527661Trinucleotide(TCA)1030301..330439  bpPrimer
MF1527611Trinucleotide(ATC)72174..94394  bpPrimer
MF1527531Dinucleotide(TG)714102..115415  bpPrimer
MF1527601Trinucleotide(CAG)515120..134432  bpPrimer
MF1527461Dinucleotide(AC)1428104..131431  bpPrimer
MF1527431Dinucleotide(CA)816135..150433  bpPrimer
MF1527511Dinucleotide(CA)918174..191422  bpPrimer
MF1527551Dinucleotide(TG)132677..102402  bpPrimer
KY0261401Dinucleotide(GT)1428119..146424  bpPrimer
KY0261571Tetranucleotide(GATG)520201..220473  bpPrimer
KY0261511Trinucleotide(AGG)82492..115415  bpPrimer
KY0261491Trinucleotide(CCT)515244..258429  bpPrimer
KY0261731Hexanucleotide(AGAACC)530289..318460  bpPrimer
KY0261561Tetranucleotide(TCCA)1040301..340394  bpPrimer
KY0261461Trinucleotide(CAG)51574..88388  bpPrimer
KY0261711Pentanucleotide(TCTCA)52541..65365  bpPrimer
KY0261651Pentanucleotide(TTAGC)735134..168433  bpPrimer
KY0261421Dinucleotide(AC)816111..126418  bpPrimer
KY0261741Hexanucleotide(TTAGGG)636129..164429  bpPrimer
KY0261441Dinucleotide(AC)132669..94394  bpPrimer
KY0261531Trinucleotide(CTC)515301..315392  bpPrimer
KY0261541Tetranucleotide(AGGA)104055..94394  bpPrimer
KY0261721Hexanucleotide(AGGACC)530301..330375  bpPrimer
KY0261641Pentanucleotide(TATAC)945162..206440  bpPrimer
KY0261591Tetranucleotide(TTCT)728118..145430  bpPrimer
KY0261581Tetranucleotide(TATC)520189..208457  bpPrimer
KY0261691Pentanucleotide(AATCT)840186..225406  bpPrimer
KY0261391Dinucleotide(CT)1836122..157437  bpPrimer
KY0261661Pentanucleotide(AAAAC)52589..113413  bpPrimer
KY0261601Tetranucleotide(ATAG)624301..324384  bpPrimer
KY0261681Pentanucleotide(TTTCA)52590..114414  bpPrimer
KY0261671Pentanucleotide(ATCTA)735301..335406  bpPrimer
KY0261611Tetranucleotide(AGAT)1248153..200450  bpPrimer
KY0261521Trinucleotide(GAT)1236244..279477  bpPrimer
KY0261411Dinucleotide(GA)1530185..214459  bpPrimer
KY0261481Trinucleotide(GCT)618109..126426  bpPrimer
KY0261431Dinucleotide(AG)2856143..198449  bpPrimer
KY0261471Trinucleotide(TGA)824301..324407  bpPrimer
KY0261451Dinucleotide(CA)142862..89389  bpPrimer
KY0261751Hexanucleotide(CCTGGT)530301..330410  bpPrimer
KY0261701Pentanucleotide(AGAGG)630263..292432  bpPrimer
KY0261501Trinucleotide(TTA)515298..312423  bpPrimer
KY0261551Tetranucleotide(GATA)104096..135435  bpPrimer
KY0261621Tetranucleotide(GATA)218470..153428  bpPrimer
KY0261631Tetranucleotide(TCTA)832191..222485  bpPrimer
 
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