Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Labeo pangusia [11]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
GQ4874801Dinucleotide(CA)81658..7396  bpPrimer
GQ4874831Dinucleotide(AC)112231..5273  bpPrimer
GQ4874811Dinucleotide(TG)112255..76108  bpPrimer
GQ4874821Dinucleotide(TG)142846..73101  bpPrimer
GQ2277461Composite(CT)7(CA)83066..95136  bpPrimer
GQ2586651Dinucleotide(TG)142846..73124  bpPrimer
FN3980991Dinucleotide(TG)142846..73124  bpPrimer
GQ2586631Dinucleotide(AC)112254..75103  bpPrimer
FN3980981Dinucleotide(TG)112277..98150  bpPrimer
GQ2586641Dinucleotide(TG)112277..98150  bpPrimer
FN3980971Dinucleotide(AC)112254..75103  bpPrimer
 
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