Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Labeo fimbriatus [69]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
GQ4874841Dinucleotide(AC)81623..3874  bpPrimer
GQ4874851Dinucleotide(TG)71480..93141  bpPrimer
GQ4874852Dinucleotide(TG)122496..119141  bpPrimer
JQ8381681Dinucleotide(CT)2448180..227235  bpPrimer
JQ8381641Dinucleotide(AG)2754131..184459  bpPrimer
JQ8381701Dinucleotide(AC)61226..37273  bpPrimer
JQ8381702Dinucleotide(CT)1938164..201273  bpPrimer
JQ8381703Dinucleotide(TC)1020203..222273  bpPrimer
JQ8381711Dinucleotide(GA)2652120..171280  bpPrimer
JQ8381671Dinucleotide(CA)102069..88532  bpPrimer
JQ8381672Dinucleotide(AG)64128360..487532  bpPrimer
JQ8381621Dinucleotide(AG)2040148..187315  bpPrimer
JQ8381622Mononucleotide(A)1313291..303315  bpPrimer
JQ8381591Dinucleotide(CT)122490..113338  bpPrimer
JQ8381592Dinucleotide(TC)1326119..144338  bpPrimer
JQ8381593Dinucleotide(TC)816149..164338  bpPrimer
JQ8381651Dinucleotide(CT)1020117..136203  bpPrimer
JQ8381661Dinucleotide(GA)2754118..171300  bpPrimer
JQ8381601Dinucleotide(CT)816145..160337  bpPrimer
JQ8381602Dinucleotide(TC)918162..179337  bpPrimer
JQ8381603Dinucleotide(CT)1224219..242337  bpPrimer
JQ8381691Dinucleotide(AC)81699..114353  bpPrimer
JQ8381631Dinucleotide(AG)367222..93319  bpPrimer
JQ8381632Dinucleotide(GT)612157..168319  bpPrimer
JQ8381571Dinucleotide(AG)816150..165302  bpPrimer
JQ8381572Dinucleotide(AG)1938179..216302  bpPrimer
JQ8381581Dinucleotide(AG)52104132..235372  bpPrimer
JQ8381611Dinucleotide(CT)183695..130298  bpPrimer
JQ8381612Dinucleotide(CT)816133..148298  bpPrimer
KF3564941Dinucleotide(CT)1020139..158331  bpPrimer
KF3564942Dinucleotide(TG)612250..261331  bpPrimer
KF3565001Dinucleotide(CT)214284..125315  bpPrimer
KF3564771Mononucleotide(A)1010204..213503  bpPrimer
KF3564772Dinucleotide(AG)2958361..418503  bpPrimer
KF3565081Dinucleotide(CT)816170..185432  bpPrimer
KF3565082Dinucleotide(CT)1530216..245432  bpPrimer
KF3565083Dinucleotide(TC)1428247..274432  bpPrimer
KF3564811Dinucleotide(AG)1632107..138273  bpPrimer
KF3564812Composite(GT)8(GA)1546166..211273  bpPrimer
KF3565161Dinucleotide(AG)91833..5050  bpPrimer
KF3564891Dinucleotide(AG)1224120..143615  bpPrimer
KF3564892Dinucleotide(GA)1020183..202615  bpPrimer
KF3564893Dinucleotide(GA)612219..230615  bpPrimer
KF3564894Composite(AG)6(TC)726232..257615  bpPrimer
KF3564721Dinucleotide(AG)438641..126448  bpPrimer
KF3564722Dinucleotide(GT)612190..201448  bpPrimer
KF3565011Dinucleotide(GA)377485..158306  bpPrimer
KF3564731Dinucleotide(CT)816170..185434  bpPrimer
KF3564732Dinucleotide(CT)1020216..235434  bpPrimer
KF3564733Dinucleotide(TC)1734245..278434  bpPrimer
KF3564951Dinucleotide(GA)2040106..145366  bpPrimer
KF3564831Dinucleotide(AG)53106177..282443  bpPrimer
KF3565071Dinucleotide(CT)81682..97326  bpPrimer
KF3565072Dinucleotide(TC)1224103..126326  bpPrimer
KF3565073Dinucleotide(TC)1020131..150326  bpPrimer
KF3564691Composite(CA)28(GA)1382145..226304  bpPrimer
KF3564692Dinucleotide(GA)2448229..276304  bpPrimer
KF3564741Dinucleotide(TC)612158..169376  bpPrimer
KF3564742Dinucleotide(TC)612177..188376  bpPrimer
KF3564743Dinucleotide(TC)1428191..218376  bpPrimer
KF3565111Dinucleotide(AC)91879..96323  bpPrimer
KF3565112Dinucleotide(TC)612131..142323  bpPrimer
KF3565113Composite(TC)12(AC)738190..227323  bpPrimer
KF3564861Dinucleotide(AG)2652105..156231  bpPrimer
KF3564751Dinucleotide(AG)153095..124420  bpPrimer
KF3564752Dinucleotide(GA)714336..349420  bpPrimer
KF3564791Dinucleotide(AG)52104177..280444  bpPrimer
KF3564801Dinucleotide(GA)2346167..212323  bpPrimer
KF3564701Dinucleotide(AG)255059..108360  bpPrimer
KF3565151Dinucleotide(AG)3570177..246443  bpPrimer
KF3565152Dinucleotide(AG)1326257..282443  bpPrimer
KF3565091Dinucleotide(CT)714186..199374  bpPrimer
KF3565092Dinucleotide(TC)918201..218374  bpPrimer
KF3565093Dinucleotide(CT)1020254..273374  bpPrimer
KF3564821Dinucleotide(GA)2040109..148326  bpPrimer
KF3564822Dinucleotide(GA)714209..222326  bpPrimer
KF3565031Dinucleotide(AG)71478..91363  bpPrimer
KF3565032Dinucleotide(AG)612124..135363  bpPrimer
KF3564981Dinucleotide(CA)1122114..1351002  bpPrimer
KF3564982Composite(AG)69(TG)11160407..5661002  bpPrimer
KF3564711Dinucleotide(GA)2550134..183494  bpPrimer
KF3564991Dinucleotide(CT)61273..84474  bpPrimer
KF3564992Dinucleotide(TC)163286..117474  bpPrimer
KF3564761Dinucleotide(AG)3774127..200443  bpPrimer
KF3564762Dinucleotide(GA)1224202..225443  bpPrimer
GQ3297071Dinucleotide(AC)193824..6197  bpPrimer
KF3565021Dinucleotide(CT)918170..187447  bpPrimer
KF3565022Dinucleotide(CT)1020228..247447  bpPrimer
KF3565023Dinucleotide(TC)1020249..268447  bpPrimer
KF3565024Dinucleotide(CT)612308..319447  bpPrimer
KF3564681Dinucleotide(GA)816176..191330  bpPrimer
KF3564682Dinucleotide(GA)1530196..225330  bpPrimer
KF3564683Dinucleotide(GA)1020230..249330  bpPrimer
KF3564781Mononucleotide(A)1010196..205526  bpPrimer
KF3564782Dinucleotide(AG)2958353..410526  bpPrimer
KF3564783Mononucleotide(A)1313496..508526  bpPrimer
KF3565131Dinucleotide(TC)612158..169367  bpPrimer
KF3565132Dinucleotide(CT)2244174..217367  bpPrimer
KF3565061Dinucleotide(GA)1428287..314475  bpPrimer
KF3565062Dinucleotide(AG)1428322..349475  bpPrimer
KF3564911Dinucleotide(GA)714168..181325  bpPrimer
KF3564912Dinucleotide(GA)1428186..213325  bpPrimer
KF3564913Dinucleotide(GA)816228..243325  bpPrimer
KF3565141Mononucleotide(A)1010204..213534  bpPrimer
KF3565142Dinucleotide(AG)2958361..418534  bpPrimer
KF3565143Mononucleotide(A)1313504..516534  bpPrimer
KF3564931Dinucleotide(AG)1224119..142459  bpPrimer
KF3564932Dinucleotide(GA)1530182..211459  bpPrimer
KF3564933Dinucleotide(AG)1530213..242459  bpPrimer
KF3564934Dinucleotide(GA)918272..289459  bpPrimer
GQ3297081Dinucleotide(TG)71475..88137  bpPrimer
GQ3297082Dinucleotide(TG)122491..114137  bpPrimer
KF3564971Dinucleotide(GA)2550354..403491  bpPrimer
KF3564961Dinucleotide(AG)1224102..125442  bpPrimer
KF3564962Dinucleotide(GA)1530165..194442  bpPrimer
KF3564963Dinucleotide(AG)1530196..225442  bpPrimer
KF3564964Dinucleotide(GA)918255..272442  bpPrimer
KF3564881Dinucleotide(TC)2958125..182353  bpPrimer
KF3565041Mononucleotide(A)1010204..213610  bpPrimer
KF3565042Dinucleotide(AG)3060361..420610  bpPrimer
KF3565043Mononucleotide(A)1212506..517610  bpPrimer
KF3565044Dinucleotide(AG)1734546..579610  bpPrimer
KF3564901Dinucleotide(AG)1224102..125581  bpPrimer
KF3564902Dinucleotide(GA)1530165..194581  bpPrimer
KF3564903Dinucleotide(AG)1530198..227581  bpPrimer
KF3564904Dinucleotide(GA)918257..274581  bpPrimer
KF3564921Dinucleotide(GA)61296..107463  bpPrimer
KF3564922Dinucleotide(AG)1632197..228463  bpPrimer
KF3564923Trinucleotide(CTG)618296..313463  bpPrimer
KF3565121Dinucleotide(TC)1326228..253347  bpPrimer
KF3565122Dinucleotide(TC)1632256..287347  bpPrimer
KF3565123Dinucleotide(TC)612290..301347  bpPrimer
KF3565051Mononucleotide(T)101056..65317  bpPrimer
KF3565052Dinucleotide(AG)2040213..252317  bpPrimer
KF3564841Dinucleotide(TC)61225..36427  bpPrimer
KF3564842Dinucleotide(TC)1326148..173427  bpPrimer
GQ3297061Dinucleotide(AC)81628..43107  bpPrimer
KF3564851Dinucleotide(CT)816187..202370  bpPrimer
KF3564852Dinucleotide(CT)1428209..236370  bpPrimer
KF3564853Dinucleotide(CT)612241..252370  bpPrimer
KF3565101Dinucleotide(CA)1020133..152564  bpPrimer
KF3565102Dinucleotide(AG)2142424..465564  bpPrimer
KF3565103Dinucleotide(AG)714468..481564  bpPrimer
KF3565104Dinucleotide(AG)714528..541564  bpPrimer
KF3564871Dinucleotide(AG)61266..77363  bpPrimer
KF3564872Dinucleotide(AG)61280..91363  bpPrimer
KF3564873Dinucleotide(GA)61293..104363  bpPrimer
KF3564874Dinucleotide(AG)612108..119363  bpPrimer
KF3564875Dinucleotide(AG)714122..135363  bpPrimer
 
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