Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Tor putitora [20]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JX2707841Dinucleotide(GT)1632125..156271  bpPrimer
JX2707861Dinucleotide(CA)183692..127324  bpPrimer
JX2707921Dinucleotide(AC)132654..79398  bpPrimer
JX2707922Dinucleotide(GT)1734127..160398  bpPrimer
JX2707923Dinucleotide(CA)612272..283398  bpPrimer
JX2707924Dinucleotide(AC)612287..298398  bpPrimer
JX2707931Dinucleotide(TC)61286..97269  bpPrimer
JX2707932Dinucleotide(CA)1632101..132269  bpPrimer
JX2707941Dinucleotide(CT)612260..271492  bpPrimer
JX2707901Dinucleotide(TG)295822..79168  bpPrimer
JX2707911Dinucleotide(TG)11221..22288  bpPrimer
JX2707912Dinucleotide(GT)61230..41288  bpPrimer
JX2707913Dinucleotide(GT)112276..97288  bpPrimer
JX2707914Dinucleotide(GT)816182..197288  bpPrimer
JX2707915Dinucleotide(TG)1224199..222288  bpPrimer
JX2707751Dinucleotide(GT)234626..71265  bpPrimer
JX2707881Dinucleotide(AC)204080..119646  bpPrimer
JX2707882Dinucleotide(AG)612335..346646  bpPrimer
JX2707891Dinucleotide(GT)9186..23112  bpPrimer
JX2707892Dinucleotide(TG)326445..108112  bpPrimer
JX2707831Dinucleotide(GT)183613..48149  bpPrimer
JX2707832Dinucleotide(GT)112269..90149  bpPrimer
JX2707761Dinucleotide(AC)1632134..165235  bpPrimer
 
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