Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Lutjanus russellii [57]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EF0703611Mononucleotide(A)151543..57637  bpPrimer
EF0703612Dinucleotide(TG)1836239..274637  bpPrimer
EF0703613Dinucleotide(GT)1122328..349637  bpPrimer
EF0703661Dinucleotide(TG)816259..274650  bpPrimer
EF0703491Dinucleotide(CA)153061..90404  bpPrimer
EF0703821Dinucleotide(AC)58116268..383608  bpPrimer
EF0703651Mononucleotide(A)1515120..134564  bpPrimer
EF0703711Dinucleotide(CA)2346276..321805  bpPrimer
EF0703631Dinucleotide(TG)3264167..230375  bpPrimer
EF0703701Dinucleotide(GT)816266..281445  bpPrimer
EF0703841Dinucleotide(GT)71478..91734  bpPrimer
EF0703671Dinucleotide(TG)1020143..162272  bpPrimer
EF0703771Trinucleotide(GAG)123693..128465  bpPrimer
EF0703772Dinucleotide(GT)612177..188465  bpPrimer
EF0703751Dinucleotide(GT)438676..161859  bpPrimer
EF0703691Tetranucleotide(CACT)1352181..2321247  bpPrimer
EF0703861Mononucleotide(A)1212177..188594  bpPrimer
EF0703862Dinucleotide(CA)816268..283594  bpPrimer
EF0703863Mononucleotide(A)1111385..395594  bpPrimer
EF0703601Dinucleotide(GT)112261..82333  bpPrimer
EF0703471Mononucleotide(C)181841..58242  bpPrimer
EF0703891Composite(CT)12(CA)738189..226632  bpPrimer
EF0703892c*(CA)27(AATA)7*81245..325632  bpPrimer
EF0703893Tetranucleotide(TTTA)520551..570632  bpPrimer
EF0703531Dinucleotide(TG)918383..400850  bpPrimer
EF0703681Dinucleotide(TG)71478..91849  bpPrimer
EF0703581Dinucleotide(TG)2856159..214305  bpPrimer
EF0703811Dinucleotide(GT)714108..121852  bpPrimer
EF0703812Dinucleotide(TG)1020135..154852  bpPrimer
EF0703813Dinucleotide(GT)816286..301852  bpPrimer
EF0703814Dinucleotide(GT)816489..504852  bpPrimer
EF0703801Dinucleotide(CA)1428184..211329  bpPrimer
EF0703501Dinucleotide(AC)81658..73285  bpPrimer
EF0703901Dinucleotide(TG)714346..359851  bpPrimer
EF0703902Dinucleotide(CA)1428517..544851  bpPrimer
EF0703541Mononucleotide(T)1111200..210593  bpPrimer
EF0703542Dinucleotide(TG)816312..327593  bpPrimer
EF0703543Mononucleotide(T)1212407..418593  bpPrimer
EF0703551Dinucleotide(GT)1224281..304849  bpPrimer
EF0703552Mononucleotide(T)1010801..810849  bpPrimer
EF0703791Dinucleotide(TG)1020143..162272  bpPrimer
EF0703521Dinucleotide(CA)81664..79234  bpPrimer
EF0703571Dinucleotide(TG)2244213..256318  bpPrimer
EF0703921Dinucleotide(AC)1020112..131407  bpPrimer
EF0703871Dinucleotide(TG)918377..394858  bpPrimer
EF0703621Dinucleotide(AC)1224268..291860  bpPrimer
EF0703622Dinucleotide(AT)918312..329860  bpPrimer
EF0703911Dinucleotide(TG)1020396..415598  bpPrimer
EF0703912Dinucleotide(TG)612527..538598  bpPrimer
EF0703741Dinucleotide(TG)2244215..258320  bpPrimer
EF0703831Dinucleotide(GT)612256..267350  bpPrimer
EF0703832Dinucleotide(GT)918270..287350  bpPrimer
EF0703721Dinucleotide(AC)1938137..174532  bpPrimer
EF0703781Dinucleotide(CA)1020157..176737  bpPrimer
EF0703511Dinucleotide(GT)1122415..436883  bpPrimer
EF0703641Mononucleotide(A)171743..59859  bpPrimer
EF0703642Dinucleotide(AC)714526..539859  bpPrimer
EF0703761Dinucleotide(GT)816232..247329  bpPrimer
EF0703762Dinucleotide(GT)714270..283329  bpPrimer
EF0703731Trinucleotide(GTG)515262..276859  bpPrimer
EF0703561Trinucleotide(ATT)1030187..216845  bpPrimer
EF0703562Dinucleotide(TG)918229..246845  bpPrimer
EF0703481Dinucleotide(CA)306091..150970  bpPrimer
EF0703851Dinucleotide(GT)918336..353793  bpPrimer
EF0703591Dinucleotide(GT)1122108..129606  bpPrimer
EF0703881Dinucleotide(TG)142867..94372  bpPrimer
 
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