Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Lutjanus erythropterus [75]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
DQ2900101Tetranucleotide(GTCT)624314..337590  bpPrimer
KC0068991Dinucleotide(TG)612265..276420  bpPrimer
KC0069171Dinucleotide(CA)612181..192539  bpPrimer
KC0069172Dinucleotide(CA)1938431..468539  bpPrimer
DQ2900061Tetranucleotide(TCTG)624184..207380  bpPrimer
KC0069191Dinucleotide(AC)132667..92597  bpPrimer
KC0069192Dinucleotide(AC)2346348..393597  bpPrimer
KC0068911Dinucleotide(AC)275446..99375  bpPrimer
KC0069081Mononucleotide(A)101056..65671  bpPrimer
KC0069082Dinucleotide(CA)1020449..468671  bpPrimer
KC0069111Dinucleotide(AC)1530198..227384  bpPrimer
KC0069131Dinucleotide(CA)1020106..125481  bpPrimer
DQ2900091Dinucleotide(AC)3468309..376479  bpPrimer
DQ2900051Tetranucleotide(ACAG)728184..211464  bpPrimer
KC0069091Composite(CA)10(CT)836110..145542  bpPrimer
KC0069092Dinucleotide(AG)714312..325542  bpPrimer
KC0069093Dinucleotide(AG)714328..341542  bpPrimer
JF7923901Dinucleotide(CA)122476..99270  bpPrimer
JF7923771Dinucleotide(CA)1326114..139455  bpPrimer
KC0069241Dinucleotide(AG)612492..503638  bpPrimer
KC0069242Dinucleotide(GA)612553..564638  bpPrimer
KC0069321Dinucleotide(GT)2244479..522575  bpPrimer
KC0069322Dinucleotide(AG)714530..543575  bpPrimer
KC0069211Dinucleotide(CA)612278..289553  bpPrimer
JF7923911Dinucleotide(CA)112254..75479  bpPrimer
JF7923912Trinucleotide(AGC)721272..292479  bpPrimer
JF7923751Dinucleotide(CA)816109..124192  bpPrimer
JF7923752Dinucleotide(AC)612126..137192  bpPrimer
JF7923861Dinucleotide(GT)714233..246586  bpPrimer
KC0069121Dinucleotide(GT)1020188..207559  bpPrimer
KC0069281Mononucleotide(T)1515299..313554  bpPrimer
KC0069282Dinucleotide(CA)612503..514554  bpPrimer
JF7923811Dinucleotide(AC)1224161..184433  bpPrimer
DQ2900071Tetranucleotide(TCTA)1664314..377407  bpPrimer
KC0068961Dinucleotide(GT)1020218..237595  bpPrimer
JF7923851Dinucleotide(CA)2448154..201528  bpPrimer
JF7923852Dinucleotide(CA)1632430..461528  bpPrimer
KC0068861Tetranucleotide(TGGA)520291..310365  bpPrimer
KC0069061Dinucleotide(CA)714162..175584  bpPrimer
KC0069051Dinucleotide(AC)918233..250602  bpPrimer
KC0068851Dinucleotide(AC)918182..199618  bpPrimer
KC0069151Dinucleotide(GA)1020549..568695  bpPrimer
KC0069031Dinucleotide(AC)132658..83427  bpPrimer
KC0069032Dinucleotide(CA)122485..108427  bpPrimer
KC0069033Trinucleotide(CAC)515111..125427  bpPrimer
KC0068901Dinucleotide(CT)714299..312717  bpPrimer
JF7923801Dinucleotide(CA)714343..356450  bpPrimer
JF7923761Trinucleotide(AGG)721173..193404  bpPrimer
JF7923762Dinucleotide(AC)1530276..305404  bpPrimer
KC0069251Dinucleotide(TG)61287..98518  bpPrimer
DQ2900081Composite(CTAT)9(CTGT)76487..150505  bpPrimer
KC0068941Dinucleotide(GT)918173..190500  bpPrimer
KC0068921Dinucleotide(CA)714572..585752  bpPrimer
KC0068922Dinucleotide(AC)714595..608752  bpPrimer
KC0069101Dinucleotide(TG)112286..107567  bpPrimer
KC0068951Dinucleotide(CA)816330..345491  bpPrimer
JF7923791Dinucleotide(AC)1020297..316391  bpPrimer
KC0068931Dinucleotide(AC)1734310..343399  bpPrimer
JF7923781Dinucleotide(CA)2142218..259435  bpPrimer
KC0069161Dinucleotide(AC)102064..83341  bpPrimer
KC0069162Dinucleotide(CA)91885..102341  bpPrimer
DQ2900111Tetranucleotide(TCTG)936273..308470  bpPrimer
KC0069141Dinucleotide(AC)918104..121596  bpPrimer
KC0069142Mononucleotide(T)1010570..579596  bpPrimer
KC0069271Dinucleotide(CA)81622..37532  bpPrimer
KC0069071Dinucleotide(CA)2244105..148523  bpPrimer
KC0069072Dinucleotide(AC)918309..326523  bpPrimer
KC0069231Dinucleotide(CA)153098..127481  bpPrimer
KC0068871Dinucleotide(CA)2856397..452518  bpPrimer
JF7923841Dinucleotide(TG)2244106..149566  bpPrimer
JF7923891Dinucleotide(GT)816163..178308  bpPrimer
JF7923892Dinucleotide(GT)1122280..301308  bpPrimer
JF7923831Dinucleotide(CA)1122398..419477  bpPrimer
KC0069201Dinucleotide(TG)1020357..376481  bpPrimer
KC0069261Dinucleotide(TG)816410..425754  bpPrimer
JF7923881Dinucleotide(TG)816104..119485  bpPrimer
DQ2900131Trinucleotide(TCC)515149..163605  bpPrimer
DQ2900132Tetranucleotide(GTCT)624176..199605  bpPrimer
JF7923921Dinucleotide(AC)1020343..362460  bpPrimer
KC0068881Dinucleotide(AC)81629..44642  bpPrimer
KC0068882Dinucleotide(AC)61249..60642  bpPrimer
KC0068883Dinucleotide(AC)612232..243642  bpPrimer
KC0068884Trinucleotide(CCT)721313..333642  bpPrimer
JF7923871Dinucleotide(GT)2754281..334593  bpPrimer
DQ2900121Composite(TATC)17(CATC)12116159..274626  bpPrimer
KC0068891Dinucleotide(CA)816438..453613  bpPrimer
KC0069021Dinucleotide(CA)1836174..209547  bpPrimer
KC0069011Mononucleotide(T)1313139..151523  bpPrimer
KC0069012Trinucleotide(AGA)515202..216523  bpPrimer
KC0069013Dinucleotide(TG)1938485..522523  bpPrimer
KC0069041Dinucleotide(TG)816147..162492  bpPrimer
KC0069181Dinucleotide(CA)612111..122440  bpPrimer
KC0069301Dinucleotide(GT)714169..182612  bpPrimer
KC0069302Mononucleotide(A)1010288..297612  bpPrimer
KC0068971Dinucleotide(AC)132628..53506  bpPrimer
KC0068972Dinucleotide(CA)612186..197506  bpPrimer
KC0068973Dinucleotide(AC)918201..218506  bpPrimer
KC0068974Dinucleotide(CA)816270..285506  bpPrimer
KC0069001Dinucleotide(CA)1326241..266469  bpPrimer
KC0069291Dinucleotide(AC)714572..585691  bpPrimer
KC0068981Dinucleotide(AC)816251..266519  bpPrimer
 
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