Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Lutjanus carponotatus [21]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JN2225551Tetranucleotide(TATC)3212882..209369  bpPrimer
JN2225511Tetranucleotide(ATGG)1456119..174488  bpPrimer
JN2225501Tetranucleotide(ATCC)2496423..518589  bpPrimer
JN2225521Tetranucleotide(GATA)3815282..233522  bpPrimer
JN2225531Tetranucleotide(ATAG)2911630..145265  bpPrimer
JN2225541Tetranucleotide(TCTA)2510089..188712  bpPrimer
JN2225542Tetranucleotide(TCTG)520201..220712  bpPrimer
KJ6304851Tetranucleotide(CTAT)2392159..250327  bpPrimer
KJ6304852Tetranucleotide(TCTA)624254..277327  bpPrimer
KJ6304841Tetranucleotide(GAAT)27108138..245424  bpPrimer
KJ6304741Composite(CTAT)10(CTGT)2012036..155187  bpPrimer
KJ6304731Tetranucleotide(TCAT)135293..144223  bpPrimer
KJ6304831Tetranucleotide(AATG)197654..129295  bpPrimer
KJ6304821Tetranucleotide(GGTA)936369..404530  bpPrimer
KJ6304811Tetranucleotide(TCTA)2080386..465560  bpPrimer
KJ6304751Tetranucleotide(ATAG)197683..158350  bpPrimer
KJ6304721Tetranucleotide(CATC)1872330..401603  bpPrimer
KJ6304791Tetranucleotide(AGAT)30120438..557887  bpPrimer
KJ6304711Tetranucleotide(GATG)135264..115308  bpPrimer
KJ6304781Composite(ACAG)5(ATAG)24116225..340469  bpPrimer
KJ6304801Tetranucleotide(ATGG)197676..151299  bpPrimer
KJ6304761Tetranucleotide(ATCT)27108172..279648  bpPrimer
KJ6304762Mononucleotide(T)1010355..364648  bpPrimer
KJ6304763Mononucleotide(T)1212370..381648  bpPrimer
KJ6304771Tetranucleotide(TATC)35140223..362493  bpPrimer
 
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