Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Lutjanus argentimaculatus [14]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
DQ2479231Dinucleotide(TG)61222..33303  bpPrimer
DQ2192951c*(A)31(AG)13*56357..412731  bpPrimer
DQ2192952Mononucleotide(T)1414588..601731  bpPrimer
DQ2192971Dinucleotide(AC)1938199..236442  bpPrimer
DQ2479241Trinucleotide(TGC)515339..353486  bpPrimer
KX0944931Dinucleotide(CA)142864..91166  bpPrimer
KX0944911Dinucleotide(CA)153045..74122  bpPrimer
KX0944891Dinucleotide(GT)295873..130160  bpPrimer
KX0944871Tetranucleotide(AGAT)166463..126186  bpPrimer
KX0944901Dinucleotide(TG)1530171..200221  bpPrimer
KX0944881Dinucleotide(CA)122420..43195  bpPrimer
KX0944921Dinucleotide(CA)285647..102134  bpPrimer
 
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