Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Lethrinus miniatus [22]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AF2610011Dinucleotide(TG)163249..80267  bpPrimer
AF2610031Trinucleotide(CTC)927123..149236  bpPrimer
AF2609971Dinucleotide(GT)102069..88134  bpPrimer
AF2610131Dinucleotide(TG)132658..83123  bpPrimer
AF2610101Dinucleotide(AC)183666..101140  bpPrimer
AF2610161Dinucleotide(TG)91862..79176  bpPrimer
AF2609981Dinucleotide(AC)183642..77131  bpPrimer
AF2610081Dinucleotide(GT)91845..62128  bpPrimer
AF2609991Dinucleotide(TG)1020131..150306  bpPrimer
AF2727081Dinucleotide(GT)102085..104145  bpPrimer
AF2610051Dinucleotide(GT)112245..66142  bpPrimer
AF2610041Dinucleotide(TG)61275..86156  bpPrimer
AF2610141Mononucleotide(T)1313111..123292  bpPrimer
AF2610142Dinucleotide(AC)1224225..248292  bpPrimer
AF2610091Dinucleotide(TG)132674..99179  bpPrimer
AF2610151Dinucleotide(GT)173460..93148  bpPrimer
AF2610061Dinucleotide(TC)112265..86259  bpPrimer
AF2610062Dinucleotide(TC)71488..101259  bpPrimer
AF2727091Dinucleotide(CA)346885..152214  bpPrimer
AF2610111Dinucleotide(TG)234651..96192  bpPrimer
AF2610021Dinucleotide(TG)163263..94185  bpPrimer
AF2610071Trinucleotide(AGA)144241..82160  bpPrimer
 
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