Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
 

Records overview

Microsatellites information of Danio rerio
Common name  Zebrafish, Anju
Family Cyprinidae
Habitat Freshwater
Category  Least Concern (LC)
Distribution India; Japan; Bangladesh; Sri Lanka; Pakistan; Philippines; Myanmar; Bhutan; Nepal; USA; Colombia; Martinique
 
10 record(s) found
S.No. Repeats Rep. region Rep. size Sequence length Authors Accession No.
1 (AC)6
(CA)6
(CA)6
(AC)7
(GT)16
(CA)23
(A)27
391...402
1714...1725
2557...2568
2584...2597
2769...2800
2860...2905
2945...2971
12
12
12
14
32
46
27
2971 bp. Shimoda et al.  (2020) NM_001005928
2 (TGT)6
133...150
18
3504 bp. Shimoda et al.  (2020) NM_001105129
3 (A)33
1676...1708
33
1708 bp. Shimoda et al.  (2020) NM_131645
4 (T)10
(T)14
(A)18
2803...2812
3186...3199
3366...3383
10
14
18
3383 bp. Shimoda et al.  (2020) NM_199272
5 (CT)32
(A)21
1519...1582
2219...2239
64
21
2239 bp. Shimoda et al.  (2020) NM_201057
6 (CAG)6
(TA)6
(A)32
1213...1230
1761...1772
2070...2101
18
12
32
2101 bp. Shimoda et al.  (2020) NM_205698
7 (GT)9
(GT)6
(GT)7
142...159
162...173
176...189
18
12
14
219 bp. Waits et al.  (2010) HQ116647
8 (TGTT)6
(TTTG)6
(TTAT)13
(AGAA)16
50...73
112...135
149...200
203...266
24
24
52
64
356 bp. Waits et al.  (2010) HQ116648
9 (TG)14
109...136
28
302 bp. Waits et al.  (2010) HQ116649
10 (TG)27
66...119
54
214 bp. Waits et al.  (2010) HQ116650
 
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