Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats statistics

The program finds the frequency of different type of repeats from the records available in FishMicrosat and displays in the tabular and pie chart form.

Maximum repeats types AC 9896 | TG 8022 | CA 7508

Mono nucleotide repeatsDi nucleotide repeatsTri nucleotide repeats
Tetra nucleotide repeatsPenta nucleotide RepeatsHexa nucleotide repeats
 
RepeatsFrequencyRepeatsFrequency
TTTTA
70
TATTA
64
AAAAT
63
ATAAT
58
AAATA
57
ATTAT
54
TAAAA
54
ATATA
49
TAATA
45
TTTAT
44
AATAA
41
TATAT
40
ATTTT
38
TATTT
38
AAATT
37
TTATT
37
ATATT
35
TTATA
35
TATAA
34
AATAT
29
ATAAA
29
TATTC
24
TTCTA
23
AGAAT
22
TAGAA
21
TTTTG
21
ATTCT
20
AAAAC
20
AATAG
18
GAATA
18
TTATG
16
TCTAT
16
TTTAA
15
ATTAA
15
AATTA
14
TTTCT
13
ATTAG
12
CTATT
12
TTAAA
11
ATAGA
11
AAGAA
10
ATTTA
10
CAAAA
10
CTTTT
10
GAAGA
9
TTTAG
9
TTTGT
9
TTAGA
9
GTTTT
9
AGAGA
8
TTGAA
8
AATCT
8
TTTTC
8
ACAAA
8
AGAGG
8
TCTCT
8
AAAAG
8
AATTT
8
AAAGA
8
AAACA
7
GAGAA
7
TAGTA
7
TAAAT
7
ATAAC
7
TGTTA
7
GAAAA
7
AAGTC
7
TTGTT
7
TCTTC
6
AACAT
6
TACTA
6
CTCTT
6
ATTCA
6
TATGT
6
CTCTC
6
AGAAA
6
TTAAT
6
ATATG
6
TTCTT
5
AACAA
5
AGTAT
5
TTGTA
5
ATGTT
5
GAGGA
5
TTCTC
5
TCAAG
5
AACTG
5
ATATC
5
TCTTT
5
TTTCA
5
ATTTC
4
TCAAT
4
ATCTA
4
TATAC
4
GTTAT
4
TAATT
4
AGATT
4
AAAGG
4
AGGTT
4
TAGTT
4
AACTA
4
CATAT
4
CCTTT
4
TGACT
4
GACTT
4
GATAT
4
ATAGT
4
AGAAG
4
TCTCC
4
ACGAC
4
TTTGC
3
TTATC
3
GTTCA
3
TGAAT
3
TCCTC
3
CAAAT
3
AACAC
3
GATGA
3
TGTTT
3
TTCTG
3
GTGGT
3
AGTCA
3
AATTG
3
GAGAG
3
AGGAA
3
CTTCT
3
AAATG
3
ACATA
3
AAGAG
3
CAAGT
3
CAAAG
3
TGTTC
3
AAACT
3
ACAAC
3
ACTAA
3
ATGTA
3
TTACA
2
TGTGT
2
TAAAC
2
CTTGC
2
TATGA
2
TCTCA
2
TGATA
2
GTTAC
2
CAGAC
2
CTAAA
2
AGGAG
2
TATTG
2
TTAGT
2
TGCTT
2
AGGCA
2
GGGAA
2
TCAAA
2
TAATC
2
TGAAG
2
TCAAC
2
AAGTG
2
TCCTT
2
ACAGG
2
GATGT
2
GTTTA
2
AATGT
2
ATACT
2
AATGA
2
ATGAA
2
AGATG
2
TCATG
2
CTTTA
2
TTGAC
2
ATCAC
2
GGAGA
2
ATTTG
2
TATAG
2
GATTT
2
TAAGA
2
CTATA
2
GTGAA
2
GAACA
2
CTCCT
2
AAATC
2
GAATG
2
CACTT
2
AATCA
2
CTGTT
2
AGACA
2
AGACG
2
TAATG
2
CTTTC
2
ACGTG
2
AGTTT
2
TATGG
2
CCTCT
2
CATTG
2
TATCG
1
ACGGC
1
AGATC
1
TTCCT
1
AGCCG
1
ATGGA
1
CCTAT
1
TAGGA
1
TGGTG
1
CTATC
1
ACGTA
1
AGTGT
1
CTAAC
1
TCGTG
1
GGAGG
1
GAACC
1
AGGAC
1
GAGGC
1
TATCA
1
GTGAC
1
CAGGA
1
ATAGG
1
GAATT
1
ACACA
1
AGCAG
1
AAGCT
1
AAAGC
1
GCTCG
1
TTACC
1
GTGTT
1
CAGAA
1
TTTGA
1
CTCAA
1
AACCT
1
TTGAT
1
AACCA
1
CCTCA
1
AATTC
1
ATTGT
1
GTTCT
1
ATTGA
1
TCTGG
1
TAGAT
1
CACAA
1
CACAT
1
GACAT
1
TGTTG
1
ATGAC
1
CTCCA
1
TCTTG
1
GAAGG
1
GCGGG
1
ATCAT
1
AGACT
1
GGACT
1
CTGTC
1
TAACG
1
CTCAC
1
CTGAA
1
GTATC
1
TGTCC
1
ACACT
1
TCGTA
1
ACACG
1
AGTTC
1
AAGAT
1
ACCAG
1
TTGCC
1
ATGAT
1
GGCAA
1
TCTAA
1
GCCTT
1
TGATT
1
AGTTG
1
TGTGC
1
CAATT
1
CTCTA
1
CCCCG
1
CCCCT
1
AAGGC
1
TACGT
1
ATGCA
1
CAAGG
1
TTAGC
1
TAGAG
1
GATCT
1
CAAAC
1
ACCGA
1
GATAA
1
GCCGG
1
GAGAC
1
CGTCG
1
ATCCA
1
GGTTC
1
TATGC
1
TCTGT
1
TGAGT
1
TACTG
1
ACAGA
1
GATTA
1
GGGAC
1
TTGCT
1
GTAAA
1
AACAG
1
AAGGA
1
TGGAG
1
AGGGA
1
TGCTG
1
TACTC
1
GGGAG
1
CATTA
1
TAACA
1
TCCAT
1
GATAC
1
GAGAT
1
GGCAG
1
TACCT
1
ATGGC
1
ATTAC
1
AAAGT
1
TACCC
1
ATGCT
1
GTATT
1
AATAC
1
TGCAA
1
TAAGT
1
CGTCT
1
AGAAC
1
TGTAT
1
TAGGC
1
GACGT
1
TTCAA
1
TCATT
1
ATGTC
1
GATGC
1
GCCTG
1
GATCA
1
AAGCA
1
GTGTA
1
TTTCC
1
GTCAA
1
TTCAT
1
TTACT
1
CCAGT
1
 
This pie chart repersents maximum frequencies of all types (mono, di, tri, tetera, penta and hexa) nucleotide repeats.

 
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