Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Johnius belangerii [71]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EU7474501Dinucleotide(GT)918239..256467  bpPrimer
EU7474301Dinucleotide(AC)13263..28214  bpPrimer
EU7474601Trinucleotide(CCT)51566..80434  bpPrimer
EU7474602Dinucleotide(CT)918113..130434  bpPrimer
EU7474291Dinucleotide(CA)612384..395777  bpPrimer
EU7474292Dinucleotide(AC)1224588..611777  bpPrimer
EU7474281Dinucleotide(CA)714130..143198  bpPrimer
JF7662711Dinucleotide(CA)61267..78201  bpPrimer
EU7474051Composite(CCTAAC)6(CCCTAA)6(ACCCTA)81204..123418  bpPrimer
EU7474052Hexanucleotide(CCCTAA)17102127..228418  bpPrimer
EU7474053Hexanucleotide(CCCTAA)1590232..321418  bpPrimer
EU7474054Hexanucleotide(CCCTAA)1272323..394418  bpPrimer
EU7474201Dinucleotide(CA)81630..45446  bpPrimer
EU7474202Mononucleotide(G)1111164..174446  bpPrimer
JF7662691Dinucleotide(AC)61283..94159  bpPrimer
EU7474311Dinucleotide(GT)3366291..356365  bpPrimer
EU7474421Trinucleotide(TCT)206036..95493  bpPrimer
EU7474422Dinucleotide(AC)1020315..334493  bpPrimer
JF7662721Dinucleotide(AC)61254..65155  bpPrimer
JF7662722Dinucleotide(CA)61276..87155  bpPrimer
EU7474361Dinucleotide(AC)1224182..205257  bpPrimer
EU7474611Dinucleotide(TC)612190..201344  bpPrimer
JF7662751Dinucleotide(TG)81652..67181  bpPrimer
EU7474121Dinucleotide(CA)612187..198348  bpPrimer
EU7474521Dinucleotide(AC)1530134..163258  bpPrimer
EU7474491Dinucleotide(AC)1122311..332353  bpPrimer
EU7474351Dinucleotide(AC)306035..94303  bpPrimer
JF7662761Mononucleotide(T)121221..32190  bpPrimer
JF7662762Dinucleotide(TG)91895..112190  bpPrimer
EU7474171Dinucleotide(AC)816177..192267  bpPrimer
EU7474471Composite(AC)12(TC)196289..150591  bpPrimer
EU7474472Mononucleotide(G)1212497..508591  bpPrimer
EU7474151Dinucleotide(CA)1020123..142301  bpPrimer
JF7662781Mononucleotide(A)141435..48173  bpPrimer
JF7662782Dinucleotide(TG)163273..104173  bpPrimer
EU7474451Dinucleotide(TG)255049..98163  bpPrimer
EU7474341Dinucleotide(TG)1530149..178297  bpPrimer
EU7474061Dinucleotide(AC)102093..112196  bpPrimer
EU7474181Dinucleotide(TG)459028..117383  bpPrimer
JF7662801Dinucleotide(GA)81652..67147  bpPrimer
JF7662802Dinucleotide(GA)61270..81147  bpPrimer
JF7662791Trinucleotide(GCT)61842..59101  bpPrimer
EU7474441Dinucleotide(TG)81648..63629  bpPrimer
EU7474442Composite(AG)18(TG)64868..115629  bpPrimer
EU7474443Dinucleotide(GT)714229..242629  bpPrimer
EU7474444Dinucleotide(TG)1836244..279629  bpPrimer
EU7474445Dinucleotide(GT)1530281..310629  bpPrimer
EU7474111Dinucleotide(GA)7144..17216  bpPrimer
EU7474261Dinucleotide(CA)918221..238350  bpPrimer
EU7474271Dinucleotide(AC)2346115..160243  bpPrimer
EU7474221Dinucleotide(AC)1836101..136328  bpPrimer
EU7474531Dinucleotide(TG)1530230..259300  bpPrimer
JF7662731Dinucleotide(TG)183645..80103  bpPrimer
EU7474071Dinucleotide(TG)64128108..235443  bpPrimer
EU7474072Dinucleotide(TG)816397..412443  bpPrimer
EU7474161Dinucleotide(GT)499883..180478  bpPrimer
EU7474581Dinucleotide(AG)5010019..118336  bpPrimer
EU7474582Dinucleotide(AG)816121..136336  bpPrimer
EU7474431Dinucleotide(GT)612435..446585  bpPrimer
EU7474241Dinucleotide(GA)1530239..268403  bpPrimer
EU7474242Dinucleotide(GA)1632283..314403  bpPrimer
EU7474541Dinucleotide(AC)10203..22178  bpPrimer
EU7474141Dinucleotide(GA)3468129..196402  bpPrimer
EU7474411Dinucleotide(GT)2040211..250336  bpPrimer
EU7474321Dinucleotide(AC)153099..128189  bpPrimer
EU7474211Dinucleotide(AC)1224341..364413  bpPrimer
EU7474091Dinucleotide(CA)234659..104615  bpPrimer
EU7474031Dinucleotide(TC)3468200..267404  bpPrimer
EU7474032Dinucleotide(GC)612287..298404  bpPrimer
EU7474511Mononucleotide(T)141429..42302  bpPrimer
EU7474512Dinucleotide(TG)1020181..200302  bpPrimer
EU7474551Mononucleotide(A)101020..29200  bpPrimer
EU7474552Dinucleotide(AC)61232..43200  bpPrimer
EU7474553Mononucleotide(A)101048..57200  bpPrimer
EU7474131Dinucleotide(GA)16324..35116  bpPrimer
EU7474041Dinucleotide(AG)43863..88256  bpPrimer
JF7662771Mononucleotide(A)111191..101159  bpPrimer
JF7662772Trinucleotide(AGC)515123..137159  bpPrimer
EU7474571Composite(TA)8(TG)1546127..172328  bpPrimer
EU7474572Dinucleotide(TG)816175..190328  bpPrimer
EU7474561Dinucleotide(GT)714265..278357  bpPrimer
EU7474231Dinucleotide(GA)1326108..133302  bpPrimer
EU7474371Dinucleotide(GT)122486..109413  bpPrimer
EU7474081Dinucleotide(TG)32648..71273  bpPrimer
EU7474251Dinucleotide(TG)52104122..225311  bpPrimer
EU7474331Dinucleotide(GT)816230..245441  bpPrimer
EU7474591Trinucleotide(TGC)92755..81338  bpPrimer
EU7474592Dinucleotide(GA)56112121..232338  bpPrimer
EU7474593Dinucleotide(GA)612234..245338  bpPrimer
EU7474381Dinucleotide(GT)714131..144413  bpPrimer
EU7474382Dinucleotide(TG)1020150..169413  bpPrimer
EU7474401Dinucleotide(TG)816188..203206  bpPrimer
EU7474101Dinucleotide(AG)336628..93293  bpPrimer
 
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