Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Harpadon nehereus [20]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
HQ1855891Dinucleotide(CT)265276..127197  bpPrimer
HQ1855892Dinucleotide(TC)816139..154197  bpPrimer
HQ1855951Dinucleotide(AC)81686..101232  bpPrimer
HQ1855821Tetranucleotide(CAGA)72876..103211  bpPrimer
HQ1855981Dinucleotide(GT)1428167..194321  bpPrimer
HQ1855941Dinucleotide(CT)816178..193252  bpPrimer
HQ1855861Trinucleotide(CTC)51596..110196  bpPrimer
HQ1855991Trinucleotide(GGA)721196..216270  bpPrimer
HQ1855921Dinucleotide(TC)1326138..163286  bpPrimer
HQ1855841Dinucleotide(TC)81681..96219  bpPrimer
HQ1855961Dinucleotide(CT)612110..121222  bpPrimer
HQ1855971Dinucleotide(GA)1122130..151250  bpPrimer
HQ1855931Dinucleotide(TG)61285..96211  bpPrimer
HQ1855901Dinucleotide(AG)612104..115222  bpPrimer
HQ1855871Dinucleotide(GA)71493..106253  bpPrimer
 
Home  CABin home  Support &Feedback
Copyright© NBFGR (ICAR), All Rights Reserved.
Designed and developed by NABG team, NBFGR, Lucknow