Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Gymnosarda unicolor [13]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KC4055961Tetranucleotide(ATCT)1040163..202426  bpPrimer
KC4056061Trinucleotide(GCA)927293..319458  bpPrimer
KC4056011Tetranucleotide(CTTT)1248193..240400  bpPrimer
KC4056031Pentanucleotide(CTGAA)1260218..277464  bpPrimer
KC4056041Pentanucleotide(TTTTG)1050294..343550  bpPrimer
KC4055941Trinucleotide(ATG)1339199..237330  bpPrimer
KC4056021Trinucleotide(AAT)824126..149421  bpPrimer
KC4055971Trinucleotide(TTA)1339174..212525  bpPrimer
KC4055981Tetranucleotide(TTTG)832229..260515  bpPrimer
KC4055951Tetranucleotide(GATA)1560200..259427  bpPrimer
KC4056001Trinucleotide(GCT)927158..184371  bpPrimer
KC4055991Tetranucleotide(GGAT)936141..176405  bpPrimer
KC4056051Pentanucleotide(TAGAA)945190..234456  bpPrimer
 
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