Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Gnathanodon speciosus [38]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AY9524591Tetranucleotide(ACTG)1352295..346599  bpPrimer
AY9524571Tetranucleotide(GTCC)624190..213779  bpPrimer
AY9524572Tetranucleotide(ATCT)1768242..309779  bpPrimer
AY9524551Dinucleotide(TG)714365..378607  bpPrimer
AY9524541Dinucleotide(CA)1734252..285468  bpPrimer
AY9524561Dinucleotide(CA)1020220..239542  bpPrimer
AY9524581Tetranucleotide(GACA)520414..433627  bpPrimer
LC6618491Tetranucleotide(TATC)520211..230560  bpPrimer
LC6618492Tetranucleotide(TCTA)1768233..300560  bpPrimer
LC6618493Composite(TCTG)6(TCTA)544474..517560  bpPrimer
LC6618451Tetranucleotide(TAGA)1976180..255560  bpPrimer
LC6618501Pentanucleotide(TAATA)735212..246640  bpPrimer
LC6618502Tetranucleotide(TCAT)520278..297640  bpPrimer
LC6618503Tetranucleotide(TGAG)832500..531640  bpPrimer
LC6618504Tetranucleotide(TGAG)832536..567640  bpPrimer
LC6618421c*(TC)7(TCTA)9*48193..240560  bpPrimer
LC6618401Pentanucleotide(GCCTT)840254..293560  bpPrimer
LC6618291Tetranucleotide(TTTC)1352242..293560  bpPrimer
LC6618361Pentanucleotide(CTCTT)1260233..292560  bpPrimer
LC6618411Tetranucleotide(TCAA)1144264..307560  bpPrimer
LC6618481Tetranucleotide(AGAT)1872194..265560  bpPrimer
LC6618471Tetranucleotide(AAGG)832231..262560  bpPrimer
LC6618351Tetranucleotide(AATC)832264..295560  bpPrimer
LC6618391Pentanucleotide(CCTCT)630245..274560  bpPrimer
LC6618341Tetranucleotide(TTTC)1144256..299640  bpPrimer
LC6618342Dinucleotide(CT)2142482..523640  bpPrimer
LC6618343Dinucleotide(CT)918526..543640  bpPrimer
LC6618344Dinucleotide(CT)1326546..571640  bpPrimer
LC6618345Dinucleotide(CT)1326574..599640  bpPrimer
LC6618441Tetranucleotide(TCAC)624159..182560  bpPrimer
LC6618442Mononucleotide(G)1818383..400560  bpPrimer
LC6618443Mononucleotide(C)1111548..558560  bpPrimer
LC6618231Tetranucleotide(ATAG)1976202..277560  bpPrimer
LC6618232Tetranucleotide(TAGA)1664279..342560  bpPrimer
LC6618511Dinucleotide(GT)816100..115560  bpPrimer
LC6618512Tetranucleotide(CAAA)1248258..305560  bpPrimer
LC6618261Tetranucleotide(AGAT)26104266..369560  bpPrimer
LC6618262Tetranucleotide(ATAG)1456372..427560  bpPrimer
LC6618201Tetranucleotide(TTTG)624255..278560  bpPrimer
LC6618331Pentanucleotide(AGAAA)1050250..299560  bpPrimer
LC6618371Tetranucleotide(AAAG)832267..298640  bpPrimer
LC6618281Trinucleotide(TGT)515111..125560  bpPrimer
LC6618282Tetranucleotide(ACAG)624258..281560  bpPrimer
LC6618211Tetranucleotide(ATAG)1976282..357560  bpPrimer
LC6618212Tetranucleotide(TAGA)1664359..422560  bpPrimer
LC6618461Dinucleotide(AG)61232..43640  bpPrimer
LC6618462Tetranucleotide(CTAT)25100216..315640  bpPrimer
LC6618463Dinucleotide(TC)1224425..448640  bpPrimer
LC6618464Dinucleotide(GT)1530555..584640  bpPrimer
LC6618221Mononucleotide(T)101035..44560  bpPrimer
LC6618222Dinucleotide(TG)1224109..132560  bpPrimer
LC6618223Tetranucleotide(TTTG)832238..269560  bpPrimer
LC6618224Mononucleotide(A)1616449..464560  bpPrimer
LC6618381Tetranucleotide(CAGA)728280..307640  bpPrimer
LC6618382Dinucleotide(AG)816561..576640  bpPrimer
LC6618431Tetranucleotide(TTCC)1664258..321559  bpPrimer
LC6618432Tetranucleotide(TCCA)728331..358559  bpPrimer
LC6618311Tetranucleotide(CTGT)1040296..335720  bpPrimer
LC6618271Pentanucleotide(AGAAG)1260269..328560  bpPrimer
LC6618251Tetranucleotide(TCTA)936224..259560  bpPrimer
LC6618252Dinucleotide(GT)1122449..470560  bpPrimer
LC6618241Dinucleotide(AC)102045..64560  bpPrimer
LC6618242Tetranucleotide(TATC)1560197..256560  bpPrimer
LC6618301Tetranucleotide(TGTT)624241..264560  bpPrimer
LC6618302Trinucleotide(CAT)1442304..345560  bpPrimer
LC6618303Mononucleotide(C)1313435..447560  bpPrimer
LC6618304Trinucleotide(GAG)515513..527560  bpPrimer
LC6618321Dinucleotide(CA)12241..24560  bpPrimer
LC6618322Mononucleotide(G)1111107..117560  bpPrimer
LC6618323Tetranucleotide(TTGT)832294..325560  bpPrimer
LC6618324Mononucleotide(T)1212501..512560  bpPrimer
 
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