Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Glyptosternon maculatum [29]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EU8396301Dinucleotide(TG)306049..108124  bpPrimer
EU8396331Dinucleotide(CA)418270..151217  bpPrimer
EU8396332Dinucleotide(TC)714189..202217  bpPrimer
EU8396371Dinucleotide(TG)265269..120154  bpPrimer
EU8396171Composite(TC)7(AC)236035..94157  bpPrimer
EU8396311Dinucleotide(GT)71491..104172  bpPrimer
EU8396341Dinucleotide(AC)163236..67184  bpPrimer
EU8396342Dinucleotide(AC)346869..136184  bpPrimer
EU8396211Dinucleotide(AC)204034..73166  bpPrimer
EU8396212Dinucleotide(CA)102080..99166  bpPrimer
EU8396141Dinucleotide(CA)255028..77165  bpPrimer
EU8396142Dinucleotide(CA)336680..145165  bpPrimer
EU8396161Dinucleotide(TG)142878..105151  bpPrimer
EU8396221Dinucleotide(AC)336628..93153  bpPrimer
EU8396222Dinucleotide(CA)163295..126153  bpPrimer
EU8396281Dinucleotide(AC)714139..152215  bpPrimer
EU8396291Dinucleotide(GT)295848..105170  bpPrimer
EU8396131Dinucleotide(AC)1326105..130226  bpPrimer
EU8396132Dinucleotide(AC)1734133..166226  bpPrimer
EU8396251Dinucleotide(AC)316244..105173  bpPrimer
EU8396252Dinucleotide(AC)612114..125173  bpPrimer
EU8396253Dinucleotide(AC)1020136..155173  bpPrimer
EU8396121Dinucleotide(AC)244842..89134  bpPrimer
EU8396321Dinucleotide(CA)326498..161190  bpPrimer
EU8396261Dinucleotide(CA)265225..76126  bpPrimer
EU8396201Dinucleotide(CA)10120241..242288  bpPrimer
EU8396381Dinucleotide(CA)397843..120177  bpPrimer
EU8396382Dinucleotide(CA)2040122..161177  bpPrimer
EU8396191Dinucleotide(GT)612100..111197  bpPrimer
EU8396192Dinucleotide(GT)612132..143197  bpPrimer
EU8396193Dinucleotide(GT)612148..159197  bpPrimer
EU8396231Composite(TG)11(GT)73653..88103  bpPrimer
EU8396361Dinucleotide(CA)326439..102124  bpPrimer
EU8396391Dinucleotide(AC)153036..65159  bpPrimer
EU8396392Dinucleotide(AC)61270..81159  bpPrimer
EU8396351Dinucleotide(AC)183643..78117  bpPrimer
EU8396111Dinucleotide(CA)6613240..171359  bpPrimer
EU8396112Dinucleotide(AC)55110187..296359  bpPrimer
EU8396151Dinucleotide(GT)357054..123167  bpPrimer
EU8396271Dinucleotide(CA)469226..117140  bpPrimer
EU8396241Dinucleotide(TG)214241..82182  bpPrimer
EU8396242Dinucleotide(GT)81696..111182  bpPrimer
EU8396243Dinucleotide(GT)1428124..151182  bpPrimer
 
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