Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Gambusia holbrooki [25]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JX8456951Trinucleotide(TCA)144267..108403  bpPrimer
JX8456991Trinucleotide(TAT)267893..170242  bpPrimer
JX8456871Tetranucleotide(AGAT)1248252..299449  bpPrimer
JX8457011Dinucleotide(TG)1224171..194367  bpPrimer
JX8457091Trinucleotide(CTG)164863..110236  bpPrimer
JX8457092Dinucleotide(CA)1122195..216236  bpPrimer
JX8457093Dinucleotide(CA)612225..236236  bpPrimer
JX8457001Dinucleotide(AC)153084..113404  bpPrimer
JX8457101Trinucleotide(ATA)1133216..248389  bpPrimer
JX8456941Trinucleotide(ATG)113348..80329  bpPrimer
JX8456961Tetranucleotide(ATCC)1352156..207314  bpPrimer
JX8456931Trinucleotide(CCA)1030285..314428  bpPrimer
JX8456981Trinucleotide(AAT)1236260..295473  bpPrimer
JX8457081Trinucleotide(GAT)185493..146253  bpPrimer
JX8457031Dinucleotide(AC)1224102..125248  bpPrimer
JX8457051Trinucleotide(CAG)1030420..449493  bpPrimer
JX8456881Tetranucleotide(ATTT)104092..131425  bpPrimer
JX8457071Trinucleotide(ATA)1339199..237339  bpPrimer
JX8456891Tetranucleotide(CTGT)1040117..156342  bpPrimer
JX8456911Trinucleotide(CTT)1236210..245403  bpPrimer
JX8456921Trinucleotide(TAT)824359..382447  bpPrimer
JX8457021Dinucleotide(AC)2244182..225399  bpPrimer
JX8456901Tetranucleotide(GTCT)832108..139435  bpPrimer
JX8456971Tetranucleotide(TCCA)1144260..303475  bpPrimer
JX8457111Trinucleotide(ATT)1339202..240293  bpPrimer
JX8457041Dinucleotide(AC)1632129..160315  bpPrimer
JX8457061Trinucleotide(TGT)1854130..183471  bpPrimer
 
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