Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Hippocampus trimaculatus [37]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
HM7758781Dinucleotide(TG)142847..74184  bpPrimer
HM7758782Dinucleotide(GT)102076..95184  bpPrimer
HM7758783Dinucleotide(GT)71498..111184  bpPrimer
HM7758721Dinucleotide(GT)1632101..132209  bpPrimer
HM7758711Dinucleotide(TG)153086..115190  bpPrimer
HM7758712Dinucleotide(TG)918118..135190  bpPrimer
HM7758731Dinucleotide(GT)1530111..140230  bpPrimer
HM7758801Mononucleotide(T)1111139..149339  bpPrimer
HM7758802Dinucleotide(GT)1326202..227339  bpPrimer
HM7758811Trinucleotide(GAG)1854156..209310  bpPrimer
HM7758741Dinucleotide(CA)214281..122200  bpPrimer
HM7758701Dinucleotide(GT)2550105..154230  bpPrimer
HM7758791Dinucleotide(TG)295848..105178  bpPrimer
HM7758751Tetranucleotide(TTTC)1976151..226303  bpPrimer
HM7758761Tetranucleotide(CTTT)124896..143206  bpPrimer
HM7758771Dinucleotide(TG)163261..92207  bpPrimer
KP2263031Trinucleotide(TTC)61882..99300  bpPrimer
KP2263021Trinucleotide(CAC)515229..243378  bpPrimer
KP2263081Trinucleotide(ATT)515206..220420  bpPrimer
KP2263051Trinucleotide(ACA)515206..220397  bpPrimer
KP2263001Tetranucleotide(TGGT)624218..241420  bpPrimer
KP2263131Trinucleotide(AAG)618186..203380  bpPrimer
KP2263121Trinucleotide(ATG)618182..199420  bpPrimer
KP2263122Trinucleotide(GAG)618214..231420  bpPrimer
KP2263071Trinucleotide(GAG)618175..192360  bpPrimer
KP2262991Tetranucleotide(AAGA)520195..214420  bpPrimer
KP2263101Trinucleotide(ATT)618209..226420  bpPrimer
KP2263091Trinucleotide(ATT)515225..239420  bpPrimer
KP2263011Mononucleotide(A)111138..48360  bpPrimer
KP2263012Trinucleotide(TTG)515184..198360  bpPrimer
KP2263041Trinucleotide(TAA)618221..238420  bpPrimer
KP2263111Trinucleotide(CCA)721198..218420  bpPrimer
KP2263061Trinucleotide(TTG)515187..201385  bpPrimer
KP7482631Trinucleotide(CAT)515307..321499  bpPrimer
KP7482632Mononucleotide(A)1515419..433499  bpPrimer
KP7482601Trinucleotide(GAC)515263..277600  bpPrimer
KP7482621Dinucleotide(TG)714188..201490  bpPrimer
KP7482561Trinucleotide(CAC)515289..303720  bpPrimer
KP7482611Tetranucleotide(GATG)624191..214700  bpPrimer
KP7482641Trinucleotide(GAT)618116..133594  bpPrimer
KP7482591Dinucleotide(GT)816113..128603  bpPrimer
KP7482592Trinucleotide(GAC)515437..451603  bpPrimer
KP7482581Pentanucleotide(TTGTA)525138..162399  bpPrimer
KP7482651Tetranucleotide(TATT)624133..156523  bpPrimer
KP7482652Tetranucleotide(TTGT)728201..228523  bpPrimer
KP7482571Trinucleotide(TCA)515217..231534  bpPrimer
 
Home  CABin home  Support &Feedback
Copyright© NBFGR (ICAR), All Rights Reserved.
Designed and developed by NABG team, NBFGR, Lucknow