Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Epinephelus merra [13]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JF4298391Tetranucleotide(AGAC)114443..86138  bpPrimer
JF4298411Tetranucleotide(GGAT)72845..72296  bpPrimer
JF4298421Tetranucleotide(ATGG)52038..57282  bpPrimer
JF4298401Tetranucleotide(CTAT)72848..75155  bpPrimer
JF4298461Tetranucleotide(TAGA)728187..214366  bpPrimer
JF4298511Tetranucleotide(ATCT)520132..151276  bpPrimer
JF4298481Tetranucleotide(TGTC)520280..299443  bpPrimer
JF4298441Tetranucleotide(CTTA)624289..312363  bpPrimer
JF4298431Tetranucleotide(CCAT)624192..215310  bpPrimer
JF4298501Tetranucleotide(CAGA)520233..252298  bpPrimer
JF4298471Tetranucleotide(ATGG)52099..118233  bpPrimer
JF4298491Tetranucleotide(ATCT)1352325..376425  bpPrimer
 
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