Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Epinephelus marginatus [198]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
MG6405641Dinucleotide(TG)1122225..246295  bpPrimer
MG6405651Trinucleotide(CTG)72190..110313  bpPrimer
MG6405652Dinucleotide(TG)1224290..313313  bpPrimer
KU7623481Trinucleotide(TCC)721129..149291  bpPrimer
MG6405661Dinucleotide(GT)918142..159298  bpPrimer
KU7623461Trinucleotide(AAC)61893..110295  bpPrimer
KU7623411Dinucleotide(AC)1428129..156201  bpPrimer
KU7623541Tetranucleotide(ACAG)72877..104355  bpPrimer
KU7623542Dinucleotide(TG)2550304..353355  bpPrimer
MG6405671Trinucleotide(TGT)618148..165303  bpPrimer
KU7623441Tetranucleotide(GATG)936110..145270  bpPrimer
KU7623521Tetranucleotide(ATCC)83283..114164  bpPrimer
KU7623421Dinucleotide(TG)71498..111167  bpPrimer
KU7623531Tetranucleotide(TATG)728125..152283  bpPrimer
KU7623431Tetranucleotide(ATCT)156063..122221  bpPrimer
KU7623491Trinucleotide(TGT)618241..258364  bpPrimer
MG6405631Dinucleotide(AC)142885..112236  bpPrimer
KU7623471Trinucleotide(TAC)51584..98283  bpPrimer
MG6405681Tetranucleotide(ATCC)520243..262326  bpPrimer
KU7623451Dinucleotide(GA)71480..93256  bpPrimer
KU7623501Tetranucleotide(ATCT)145671..126263  bpPrimer
KU7623502Mononucleotide(A)1111201..211263  bpPrimer
KU7623511Tetranucleotide(CTAT)1664110..173238  bpPrimer
KU7623551Trinucleotide(TTC)82471..94198  bpPrimer
 
Home  CABin home  Support &Feedback
Copyright© NBFGR (ICAR), All Rights Reserved.
Designed and developed by NABG team, NBFGR, Lucknow