Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Epinephelus corallicola [49]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JX6840301Dinucleotide(GT)1530465..494735  bpPrimer
JX6840631Dinucleotide(AC)1224125..148916  bpPrimer
JX6840632Dinucleotide(TG)1734381..414916  bpPrimer
JX6840441Mononucleotide(T)1111729..7391280  bpPrimer
JX6840442Mononucleotide(T)1010880..8891280  bpPrimer
JX6840611Dinucleotide(TG)1836181..216566  bpPrimer
JX6840411Composite(TAA)6(TAG)533766..7981051  bpPrimer
JX6840412Trinucleotide(GTT)5151012..10261051  bpPrimer
JX6840511Mononucleotide(A)1515621..635881  bpPrimer
JX6840321Mononucleotide(G)2323157..179782  bpPrimer
JX6840201Dinucleotide(AC)612696..7071292  bpPrimer
JX6840202Dinucleotide(AC)816710..7251292  bpPrimer
JX6840591Mononucleotide(T)1212368..3791238  bpPrimer
JX6840592Mononucleotide(T)1010417..4261238  bpPrimer
JX6840593Mononucleotide(A)1010781..7901238  bpPrimer
JX6840291Mononucleotide(A)14142..15868  bpPrimer
JX6840191Mononucleotide(A)1515176..190687  bpPrimer
JX6840601Dinucleotide(TG)714221..234479  bpPrimer
JX6840261Mononucleotide(A)111149..591084  bpPrimer
 
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