Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Eleutheronema tetradactylum [23]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JF5139751Pentanucleotide(ACAAA)115527..81567  bpPrimer
JF5139752Pentanucleotide(ACAAA)2211087..196567  bpPrimer
JF5139761Tetranucleotide(TGTT)624202..225306  bpPrimer
AB6971771Dinucleotide(AC)71459..72802  bpPrimer
JF5139771Dinucleotide(GT)1428124..151361  bpPrimer
JF5139741Dinucleotide(TG)1632142..173489  bpPrimer
JF5139781Dinucleotide(GT)163266..97255  bpPrimer
MH6230361Dinucleotide(CA)71424..37146  bpPrimer
MH6230362Dinucleotide(CA)122439..62146  bpPrimer
MH6230381Dinucleotide(AT)81652..67137  bpPrimer
MH6230371Dinucleotide(CA)112228..49114  bpPrimer
MH6230391Dinucleotide(CA)112215..3699  bpPrimer
MH6230411Dinucleotide(TG)81632..47190  bpPrimer
MH6230412Dinucleotide(GT)1530116..145190  bpPrimer
MH6230401Dinucleotide(TG)122431..54192  bpPrimer
MH6230402Dinucleotide(TG)1734114..147192  bpPrimer
MH6230331Dinucleotide(AC)1428144..171191  bpPrimer
MH6230311Dinucleotide(AC)163233..64206  bpPrimer
MH6230301Dinucleotide(AC)1020139..158311  bpPrimer
MH6230302Dinucleotide(AC)714185..198311  bpPrimer
MH6230303Mononucleotide(A)1111299..309311  bpPrimer
MH6230351Dinucleotide(TC)8165..20231  bpPrimer
MH6230352Dinucleotide(TC)81646..61231  bpPrimer
MH6230353Dinucleotide(CT)142869..96231  bpPrimer
MH6230341Dinucleotide(AG)163233..64206  bpPrimer
MH6230321Dinucleotide(GT)71424..37139  bpPrimer
MH6230322Dinucleotide(GT)122439..62139  bpPrimer
MH6230421Dinucleotide(TG)1224158..181218  bpPrimer
 
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