Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Diodon holocanthus [36]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB6624221Dinucleotide(CA)1122138..159159  bpPrimer
AB6626371Dinucleotide(AC)81653..68114  bpPrimer
AB6620641Dinucleotide(CA)10201..2063  bpPrimer
AB6628491Dinucleotide(CA)81649..6481  bpPrimer
AB6626801Dinucleotide(TC)71442..55127  bpPrimer
AB6626802Dinucleotide(CA)91859..76127  bpPrimer
AB6621681Dinucleotide(CA)7141..1428  bpPrimer
AB6619361Dinucleotide(TG)12241..2477  bpPrimer
AB6621461Dinucleotide(CA)816128..143187  bpPrimer
AB6624431Dinucleotide(AC)61292..103129  bpPrimer
AB6623201Dinucleotide(CA)9181..1847  bpPrimer
AB6626171Dinucleotide(AC)61240..5188  bpPrimer
AB6622141Dinucleotide(CA)8161..1649  bpPrimer
AB6627561Dinucleotide(CA)9181..1866  bpPrimer
AB6618971Dinucleotide(CA)612230..241298  bpPrimer
AB6619581Dinucleotide(CA)61225..3640  bpPrimer
AB6624041Dinucleotide(CA)12241..2472  bpPrimer
AB6627751Dinucleotide(AC)71475..88144  bpPrimer
AB6625011Dinucleotide(GT)6121..1264  bpPrimer
AB6625751Dinucleotide(CT)81654..69139  bpPrimer
AB6623461Dinucleotide(AC)918219..236237  bpPrimer
AB6620261Dinucleotide(AC)11221..22283  bpPrimer
AB6620262Dinucleotide(TC)612155..166283  bpPrimer
 
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