Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Dascyllus aruanus [17]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
FJ2254401Dinucleotide(TG)2040260..299358  bpPrimer
FJ2254301Dinucleotide(CA)612122..133333  bpPrimer
FJ2254302Dinucleotide(CA)612136..147333  bpPrimer
FJ2254361Dinucleotide(GT)2652133..184303  bpPrimer
FJ2254281Tetranucleotide(TCTG)624246..269678  bpPrimer
FJ2254381Dinucleotide(AG)71470..83333  bpPrimer
FJ2254382Dinucleotide(TG)3162195..256333  bpPrimer
U636751Dinucleotide(AC)612217..228306  bpPrimer
FJ2254411Dinucleotide(TG)3162233..294536  bpPrimer
FJ2254351Dinucleotide(CA)234683..128461  bpPrimer
FJ2254352Dinucleotide(TG)612414..425461  bpPrimer
FJ2254341Dinucleotide(AC)714346..359581  bpPrimer
FJ2254342Dinucleotide(CA)1632390..421581  bpPrimer
FJ2254311c*(ATAC)5(AC)18*5480..133401  bpPrimer
FJ2254421Tetranucleotide(TCTG)1664135..198682  bpPrimer
FJ2254331Dinucleotide(TC)2244287..330469  bpPrimer
FJ2254332Dinucleotide(GT)1122334..355469  bpPrimer
FJ2254333Dinucleotide(TG)612391..402469  bpPrimer
FJ2254271Dinucleotide(CA)612271..282599  bpPrimer
FJ2254272Dinucleotide(CA)918285..302599  bpPrimer
FJ2254273Dinucleotide(CA)612311..322599  bpPrimer
FJ2254274Dinucleotide(TG)2040553..592599  bpPrimer
FJ2254391Dinucleotide(CT)612107..118356  bpPrimer
FJ2254392Dinucleotide(TC)1224120..143356  bpPrimer
FJ2254393Mononucleotide(T)1010292..301356  bpPrimer
FJ2254291Trinucleotide(CAT)927181..207529  bpPrimer
FJ2254371Dinucleotide(GT)2244402..445637  bpPrimer
FJ2254321Dinucleotide(AC)61226..37833  bpPrimer
FJ2254322Dinucleotide(CA)1632229..260833  bpPrimer
FJ2254323Dinucleotide(TG)612586..597833  bpPrimer
FJ2254324Dinucleotide(GT)1020607..626833  bpPrimer
FJ2254325Dinucleotide(TG)816747..762833  bpPrimer
 
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