Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Cromileptes altivelis [22]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
FJ6536681Dinucleotide(TG)918139..156178  bpPrimer
GQ9123181Trinucleotide(ACA)7214..241072  bpPrimer
GQ9123151Trinucleotide(ACA)7214..24418  bpPrimer
GQ9123152Trinucleotide(TTG)824393..416418  bpPrimer
GU2383141Dinucleotide(AG)183677..112288  bpPrimer
GU2383131Dinucleotide(CA)918152..169240  bpPrimer
GU2383171Tetranucleotide(GATA)145696..151325  bpPrimer
GQ9123131Trinucleotide(AGA)51514..28800  bpPrimer
GQ9123171Trinucleotide(ACA)7214..24504  bpPrimer
GQ9123172Trinucleotide(TTG)824479..502504  bpPrimer
FJ6536651Dinucleotide(GT)153018..47176  bpPrimer
GQ9123121Dinucleotide(GT)714113..126312  bpPrimer
GQ9123122Dinucleotide(TG)714128..141312  bpPrimer
GQ9123123Dinucleotide(TG)1020157..176312  bpPrimer
GQ9123124Trinucleotide(TTC)1030271..300312  bpPrimer
GU2383191Dinucleotide(TC)153087..116300  bpPrimer
GU2383192Dinucleotide(TC)714121..134300  bpPrimer
GQ9123091Trinucleotide(AGA)51513..27521  bpPrimer
GU2383151Dinucleotide(TC)285652..107300  bpPrimer
GQ9123161Trinucleotide(ACA)8244..27540  bpPrimer
GQ9123162Composite(GT)10(GA)734327..360540  bpPrimer
GQ9123163Trinucleotide(TTG)824515..538540  bpPrimer
GU2383161Dinucleotide(GT)714203..216389  bpPrimer
FJ6536661Dinucleotide(TG)142814..41148  bpPrimer
FJ6536662Mononucleotide(T)121270..81148  bpPrimer
GU2383181Composite(GT)7(GA)144298..139310  bpPrimer
FJ6536671Dinucleotide(TG)918138..155177  bpPrimer
GQ9123101Mononucleotide(A)111144..54564  bpPrimer
GQ9123102Dinucleotide(AG)2448245..292564  bpPrimer
GQ9123141Dinucleotide(TG)714296..309469  bpPrimer
GU2383201Tetranucleotide(GGAT)104094..133240  bpPrimer
 
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