Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Creteuchiloglanis kamengensis [20]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KC3352881Dinucleotide(AC)91884..101251  bpPrimer
KC3352791Dinucleotide(AC)2856151..206288  bpPrimer
KC3352761Dinucleotide(AC)112278..99249  bpPrimer
KC3352891Dinucleotide(GT)1020151..170320  bpPrimer
KC3352921Dinucleotide(TG)132643..68135  bpPrimer
KC3352851Dinucleotide(TG)816111..126233  bpPrimer
KC3352841Dinucleotide(TG)122424..47334  bpPrimer
KC3352842Dinucleotide(TG)71489..102334  bpPrimer
KC3352843Composite(TG)8(TA)628152..179334  bpPrimer
KC3352844Dinucleotide(TG)714205..218334  bpPrimer
KC3352871Dinucleotide(TG)102093..112236  bpPrimer
KC3352781Dinucleotide(CA)81677..92242  bpPrimer
KC3352782Dinucleotide(CA)816101..116242  bpPrimer
KC3352783Dinucleotide(AC)1326126..151242  bpPrimer
KC3352811Dinucleotide(AC)204028..67144  bpPrimer
KC3352931Dinucleotide(TG)714151..164308  bpPrimer
KC3352751Dinucleotide(GT)714151..164314  bpPrimer
KC3352801Dinucleotide(TG)1428151..178328  bpPrimer
KC3352802Dinucleotide(GT)714180..193328  bpPrimer
KC3352911Dinucleotide(TG)81664..79227  bpPrimer
KC3352912Dinucleotide(GT)918135..152227  bpPrimer
KC3352741Dinucleotide(AC)214231..72312  bpPrimer
KC3352742Dinucleotide(TC)612151..162312  bpPrimer
KC3352743Dinucleotide(CT)816184..199312  bpPrimer
KC3352771Dinucleotide(CA)1326151..176267  bpPrimer
KC3352821Dinucleotide(GT)1020151..170320  bpPrimer
KC3352822Dinucleotide(AT)612180..191320  bpPrimer
KC3352831Dinucleotide(GT)173455..88198  bpPrimer
KC3352861Dinucleotide(CA)1224151..174234  bpPrimer
 
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