Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Coilia dussumieri [10]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KC5894171Dinucleotide(TG)163242..73171  bpPrimer
KC5894211Dinucleotide(CA)112261..82122  bpPrimer
KC5894212Dinucleotide(CA)81684..99122  bpPrimer
KC5894231Dinucleotide(GA)183640..75162  bpPrimer
KC5894151Dinucleotide(GA)173490..123242  bpPrimer
KC5894152Dinucleotide(AG)1020125..144242  bpPrimer
KC5894153Dinucleotide(GA)1122154..175242  bpPrimer
KC5894161Dinucleotide(GA)153076..105329  bpPrimer
KC5894162Dinucleotide(GA)2142107..148329  bpPrimer
KC5894163Pentanucleotide(GAGAA)1890181..270329  bpPrimer
KC5894221Dinucleotide(CA)295868..125206  bpPrimer
KC5894222Dinucleotide(CA)612131..142206  bpPrimer
KC5894141Dinucleotide(GA)4692140..231266  bpPrimer
KC5894191Dinucleotide(CA)204050..89118  bpPrimer
KC5894201Dinucleotide(AG)244828..75125  bpPrimer
KC5894181Pentanucleotide(ATTAG)63079..108194  bpPrimer
KC5894182Pentanucleotide(TTAGA)735123..157194  bpPrimer
 
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