Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Clarias gariepinus [77]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AY1965581Trinucleotide(GGA)51525..39130  bpPrimer
AY1965881Dinucleotide(TC)112240..61119  bpPrimer
AF0093481Dinucleotide(AC)1428191..218302  bpPrimer
U308631Dinucleotide(GT)102045..64170  bpPrimer
U308632Dinucleotide(TG)91866..83170  bpPrimer
U308701Dinucleotide(CA)153061..90236  bpPrimer
U308702Dinucleotide(CA)1224162..185236  bpPrimer
AY1965731Dinucleotide(AC)71454..67172  bpPrimer
U308661Dinucleotide(CA)112282..103239  bpPrimer
AY1965251Dinucleotide(GA)612145..156345  bpPrimer
AB9054331Dinucleotide(TC)102065..84182  bpPrimer
AB9054332Mononucleotide(A)1010123..132182  bpPrimer
U308651Dinucleotide(CA)183674..109231  bpPrimer
U308641Dinucleotide(AC)214282..123230  bpPrimer
AY1965871Dinucleotide(TC)102040..59117  bpPrimer
U308691Dinucleotide(TG)122469..92218  bpPrimer
AF0093471Dinucleotide(TG)1224105..128215  bpPrimer
U308671Dinucleotide(AC)102095..114246  bpPrimer
U308672Dinucleotide(AC)714169..182246  bpPrimer
U308711Dinucleotide(GT)1122114..135257  bpPrimer
U308712Dinucleotide(GT)612137..148257  bpPrimer
U308621Dinucleotide(GT)153055..84149  bpPrimer
U308681Dinucleotide(AC)1326142..167268  bpPrimer
AF0091301Dinucleotide(CA)183674..109231  bpPrimer
KX8341811Dinucleotide(GT)102038..57252  bpPrimer
KX8341812Dinucleotide(GT)918132..149252  bpPrimer
KX8341813Dinucleotide(TG)612222..233252  bpPrimer
KX8341591Dinucleotide(GT)71432..45489  bpPrimer
KX8341592Dinucleotide(GA)193856..93489  bpPrimer
KX8341861Dinucleotide(TG)61276..87193  bpPrimer
KX8341862Dinucleotide(GT)102089..108193  bpPrimer
KX8341863Dinucleotide(TG)714110..123193  bpPrimer
KX8341691Dinucleotide(GT)173439..72136  bpPrimer
KX8341841Dinucleotide(TG)142813..40232  bpPrimer
KX8341842Dinucleotide(TG)2142119..160232  bpPrimer
KX8341371Composite(CT)8(CA)266844..111250  bpPrimer
KX8341821Dinucleotide(CA)1632229..260305  bpPrimer
KX8341801Dinucleotide(CA)4182203..284284  bpPrimer
KX8341791Dinucleotide(GT)1632140..171406  bpPrimer
KX8341792Dinucleotide(GT)1632343..374406  bpPrimer
KX8341731Dinucleotide(CA)612186..197357  bpPrimer
KX8341732Dinucleotide(TG)2652231..282357  bpPrimer
KX8341581Dinucleotide(CA)1428134..161210  bpPrimer
KX8341391Dinucleotide(GT)132652..77198  bpPrimer
KX8341531Dinucleotide(TG)91899..116195  bpPrimer
KX8341611Dinucleotide(AC)81684..99263  bpPrimer
KX8341612Dinucleotide(AC)1224122..145263  bpPrimer
KX8341613Dinucleotide(CA)1326155..180263  bpPrimer
KX8341561Dinucleotide(GT)714331..344428  bpPrimer
KX8341601Dinucleotide(CA)204047..86240  bpPrimer
KX8341602Dinucleotide(AC)1122191..212240  bpPrimer
KX8341681Dinucleotide(TG)1122108..129467  bpPrimer
KX8341682Tetranucleotide(ACAG)624256..279467  bpPrimer
KX8341891Dinucleotide(CA)24481..48174  bpPrimer
KX8341892Dinucleotide(AC)1020133..152174  bpPrimer
KX8341671Dinucleotide(TG)112250..71336  bpPrimer
KX8341761Dinucleotide(AC)1632176..207258  bpPrimer
KX8341721Dinucleotide(AC)204095..134337  bpPrimer
KX8341421Dinucleotide(TG)204023..62187  bpPrimer
KX8341781Dinucleotide(AC)81646..61350  bpPrimer
KX8341782Dinucleotide(CA)91863..80350  bpPrimer
KX8341551Dinucleotide(CA)12245..28224  bpPrimer
KX8341471Dinucleotide(GT)2550114..163360  bpPrimer
KX8341472Dinucleotide(TG)1734292..325360  bpPrimer
KX8341701Dinucleotide(GT)193844..81366  bpPrimer
KX8341771Dinucleotide(AC)102051..70216  bpPrimer
KX8341381Dinucleotide(AC)122440..63270  bpPrimer
KX8341382Dinucleotide(AC)173466..99270  bpPrimer
KX8341711Dinucleotide(GT)173476..109254  bpPrimer
KX8341411Dinucleotide(CT)81675..90510  bpPrimer
KX8341412Dinucleotide(AC)1530102..131510  bpPrimer
KX8341413Dinucleotide(TC)714256..269510  bpPrimer
KX8341641Dinucleotide(GT)714215..228331  bpPrimer
KX8341642Dinucleotide(TG)612300..311331  bpPrimer
KX8341661Dinucleotide(TG)193881..118252  bpPrimer
KX8341571Dinucleotide(CA)193836..73289  bpPrimer
KX8341572Dinucleotide(AC)612139..150289  bpPrimer
KX8341573Dinucleotide(AC)612157..168289  bpPrimer
KX8341574Dinucleotide(AC)816173..188289  bpPrimer
KX8341575Dinucleotide(AC)918191..208289  bpPrimer
KX8341576Dinucleotide(AC)612213..224289  bpPrimer
KX8341511Dinucleotide(AC)1734126..159351  bpPrimer
KX8341621Dinucleotide(CA)142892..119200  bpPrimer
KX8341851Dinucleotide(AC)81652..67230  bpPrimer
KX8341852Dinucleotide(AC)612156..167230  bpPrimer
KX8341461Dinucleotide(TG)1530119..148233  bpPrimer
KX8341462Dinucleotide(CA)816154..169233  bpPrimer
KX8341741Dinucleotide(CA)1734163..196340  bpPrimer
KX8341742Dinucleotide(CA)2958199..256340  bpPrimer
KX8341831Dinucleotide(GT)153062..91208  bpPrimer
KX8341901Composite(AG)8(TG)1036151..186330  bpPrimer
KX8341871Dinucleotide(AC)132671..96165  bpPrimer
KX8341881Composite(GT)21(GA)187869..146221  bpPrimer
KX8341541Dinucleotide(AC)2142292..333382  bpPrimer
KX8341501Dinucleotide(TG)122412..35164  bpPrimer
KX8341502Dinucleotide(GT)1326118..143164  bpPrimer
KX8341401Dinucleotide(GT)816197..212303  bpPrimer
KX8341751Dinucleotide(AC)1326158..183404  bpPrimer
KX8341752Dinucleotide(AC)1938300..337404  bpPrimer
KX8341521Dinucleotide(TG)612107..118380  bpPrimer
KX8341522Dinucleotide(TG)816125..140380  bpPrimer
KX8341523Dinucleotide(TG)918189..206380  bpPrimer
KX8341524Dinucleotide(TG)1530223..252380  bpPrimer
KX8341525Dinucleotide(TG)816255..270380  bpPrimer
KX8341526Dinucleotide(TG)1836273..308380  bpPrimer
KX8341527Dinucleotide(TG)1224321..344380  bpPrimer
KX8341631Dinucleotide(CA)1020340..359375  bpPrimer
KX8341451Dinucleotide(TC)714119..132395  bpPrimer
KX8341452Dinucleotide(GT)816243..258395  bpPrimer
KX8341453Dinucleotide(GT)918261..278395  bpPrimer
KX8341441Dinucleotide(CA)153030..59265  bpPrimer
KX8341491Dinucleotide(GT)214260..101204  bpPrimer
KX8341492Dinucleotide(AG)612113..124204  bpPrimer
KX8341431Composite(CT)8(CA)154696..141191  bpPrimer
AB9054331Dinucleotide(TC)102065..84182  bpPrimer
AB9054332Mononucleotide(A)1010123..132182  bpPrimer
 
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