Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Pangasianodon hypophthalmus [64]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ1313821Dinucleotide(GT)142870..97334  bpPrimer
AJ1313801Dinucleotide(GT)1734103..136216  bpPrimer
AJ1313831Dinucleotide(CA)1530101..130251  bpPrimer
AJ1313832Dinucleotide(TG)714191..204251  bpPrimer
AJ1313811Dinucleotide(GT)244883..130211  bpPrimer
KJ6795121Dinucleotide(CT)1326241..266349  bpPrimer
KJ6795061Dinucleotide(GA)1734441..474585  bpPrimer
KJ6795101Dinucleotide(AC)193880..117606  bpPrimer
KJ6795102Dinucleotide(CT)1224561..584606  bpPrimer
KJ6795111Tetranucleotide(ATCT)624481..504545  bpPrimer
KJ6795112Dinucleotide(AC)714515..528545  bpPrimer
KJ6795071Dinucleotide(TG)61259..70436  bpPrimer
KJ6795081Dinucleotide(TC)132698..123401  bpPrimer
KJ6795091Trinucleotide(CAA)824234..257446  bpPrimer
KJ6795092Dinucleotide(AC)1530394..423446  bpPrimer
AJ1313801Dinucleotide(GT)1734103..136216  bpPrimer
AJ1313821Dinucleotide(GT)142870..97334  bpPrimer
AJ1313811Dinucleotide(GT)244883..130211  bpPrimer
AJ1313831Dinucleotide(CA)1530101..130251  bpPrimer
AJ1313832Dinucleotide(TG)714191..204251  bpPrimer
OP5581141Tetranucleotide(ATCT)1248153..200225  bpPrimer
OP5581091Dinucleotide(AC)1734103..136208  bpPrimer
OL3225181Trinucleotide(TCA)113359..91117  bpPrimer
OP5581121Dinucleotide(GA)204070..109139  bpPrimer
OP5581101Dinucleotide(GT)204033..72122  bpPrimer
OP5581051Dinucleotide(AC)173423..56206  bpPrimer
OP5580991Dinucleotide(AC)612122..133320  bpPrimer
OP5580992Dinucleotide(TG)2040182..221320  bpPrimer
OP5581031Dinucleotide(TC)2040143..182227  bpPrimer
OL3225191Mononucleotide(T)111172..82298  bpPrimer
OL3225192Dinucleotide(TG)1734229..262298  bpPrimer
OL3225193Dinucleotide(TG)612265..276298  bpPrimer
OP5581071Dinucleotide(TG)2040189..228319  bpPrimer
OL3225221Dinucleotide(CT)2142121..162257  bpPrimer
OL3225222Dinucleotide(TC)816164..179257  bpPrimer
OP5581151Dinucleotide(TG)2244167..210364  bpPrimer
OP5581152Dinucleotide(AG)612223..234364  bpPrimer
OP5581153Dinucleotide(GT)1122273..294364  bpPrimer
OP5581181Mononucleotide(A)131375..87168  bpPrimer
OP5581182Dinucleotide(TC)1530103..132168  bpPrimer
OP5581061Dinucleotide(CT)1530157..186307  bpPrimer
OL3225211Dinucleotide(GT)153038..67281  bpPrimer
OP5581111Dinucleotide(AC)153089..118280  bpPrimer
OL3225201Dinucleotide(TG)2346151..196225  bpPrimer
OP5581131Dinucleotide(CA)2040209..248347  bpPrimer
OP5581132Dinucleotide(CA)714251..264347  bpPrimer
OP5581011Dinucleotide(AC)61232..43157  bpPrimer
OP5581012Dinucleotide(CA)173445..78157  bpPrimer
OP5581161Dinucleotide(CA)1734112..145239  bpPrimer
OP5581081Dinucleotide(CA)2550105..154206  bpPrimer
OP5581021Dinucleotide(AC)2040182..221293  bpPrimer
OP5581171Dinucleotide(TG)163286..117260  bpPrimer
OP5581172Composite(GT)10(GA)734186..219260  bpPrimer
OP5581191Dinucleotide(AC)2040160..199243  bpPrimer
OP5581001Dinucleotide(TG)204066..105184  bpPrimer
OP5581041Dinucleotide(GT)1734167..200375  bpPrimer
OP5581042Dinucleotide(GT)918283..300375  bpPrimer
 
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