Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Clarias batrachus [45]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AY1692641Dinucleotide(AC)1020268..287420  bpPrimer
AY1965671Trinucleotide(ACA)721104..124211  bpPrimer
AY1965971Dinucleotide(TC)81640..5599  bpPrimer
AY1692601Dinucleotide(TG)816206..221358  bpPrimer
AY1965991Dinucleotide(TC)183640..75119  bpPrimer
AB9054321c*(CTT)5(TC)6*2660..85190  bpPrimer
AY1692571Dinucleotide(GA)612163..174529  bpPrimer
AY1692572Dinucleotide(AC)1632340..371529  bpPrimer
AY1965351Dinucleotide(CA)1836112..147252  bpPrimer
AY1965841Dinucleotide(TC)61240..5195  bpPrimer
AY1965681Trinucleotide(ACA)824104..127214  bpPrimer
AY1965341Dinucleotide(CA)1734112..145250  bpPrimer
AJ1313751Dinucleotide(TG)2346122..167376  bpPrimer
AY1965331Dinucleotide(CA)1428112..139244  bpPrimer
AY1965831Dinucleotide(TC)193840..77121  bpPrimer
AY1965981Dinucleotide(TC)153040..69113  bpPrimer
AJ1313791Mononucleotide(A)1212160..171245  bpPrimer
AY1965561Trinucleotide(GGA)51525..39130  bpPrimer
AY1692711Dinucleotide(TG)2652191..242278  bpPrimer
AY1692581Trinucleotide(GGA)82425..48140  bpPrimer
AY1965181Dinucleotide(CA)1122111..132247  bpPrimer
AY1692621Dinucleotide(AC)612200..211515  bpPrimer
AY1692622Dinucleotide(TG)816246..261515  bpPrimer
AY1965231Dinucleotide(CA)1020137..156260  bpPrimer
AY2384461Dinucleotide(CA)1326112..137242  bpPrimer
AY1692701Dinucleotide(CA)1122129..150251  bpPrimer
AY1692691Mononucleotide(T)101038..47305  bpPrimer
AY1692692Dinucleotide(GT)71462..75305  bpPrimer
AY1692693Dinucleotide(TG)1632191..222305  bpPrimer
AY1692561Dinucleotide(CA)1530230..259724  bpPrimer
AY1692681Dinucleotide(AC)612134..145503  bpPrimer
AY1692731Dinucleotide(GT)714223..236524  bpPrimer
AY1692631Dinucleotide(CA)1632305..336381  bpPrimer
AJ1313771Dinucleotide(AC)2652120..171242  bpPrimer
AY1692721Dinucleotide(TC)612343..354429  bpPrimer
AY1965321Dinucleotide(CA)1224112..135240  bpPrimer
AY1692611Trinucleotide(AAC)721136..156315  bpPrimer
AJ1313761Dinucleotide(AC)2856106..161411  bpPrimer
AY1692671Dinucleotide(TG)61299..110184  bpPrimer
AJ1313781Dinucleotide(GT)3366173..238297  bpPrimer
AY1692591Dinucleotide(AC)1938287..324391  bpPrimer
AY1692661Dinucleotide(TG)1326401..426510  bpPrimer
AY1692651Dinucleotide(GT)102067..86378  bpPrimer
AJ1313751Dinucleotide(TG)2346122..167376  bpPrimer
AJ1313761Dinucleotide(AC)2856106..161411  bpPrimer
AJ1313791Mononucleotide(A)1212160..171245  bpPrimer
AJ1313781Dinucleotide(GT)3366173..238297  bpPrimer
AJ1313771Dinucleotide(AC)2652120..171242  bpPrimer
 
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