Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Cheilinus undulatus [15]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
HQ9956421Dinucleotide(AG)71466..79227  bpPrimer
HQ9956422Dinucleotide(GT)1224152..175227  bpPrimer
HQ9956201Dinucleotide(GT)1020371..390584  bpPrimer
HQ9956081Dinucleotide(GT)714360..373718  bpPrimer
HQ9956041Mononucleotide(C)121232..43385  bpPrimer
HQ9956031Dinucleotide(AC)81677..92294  bpPrimer
HQ9956032Dinucleotide(AC)1224107..130294  bpPrimer
HQ9956011Dinucleotide(AG)2040158..197412  bpPrimer
HQ9956012Dinucleotide(AG)1020208..227412  bpPrimer
HQ9956013Dinucleotide(GA)612233..244412  bpPrimer
HQ9956014Dinucleotide(AC)1326351..376412  bpPrimer
HQ9956391Dinucleotide(GT)61260..71450  bpPrimer
HQ9956392Dinucleotide(GT)112278..99450  bpPrimer
HQ9955741Dinucleotide(AC)714314..327488  bpPrimer
HQ9956211Dinucleotide(CA)816141..156433  bpPrimer
HQ9956541Tetranucleotide(ATCT)166474..137508  bpPrimer
HQ9956321Dinucleotide(CA)612517..528622  bpPrimer
HQ9956221Tetranucleotide(GACA)52026..45866  bpPrimer
HQ9956222Dinucleotide(CA)918162..179866  bpPrimer
HQ9956223Mononucleotide(A)1515603..617866  bpPrimer
HQ9955811Mononucleotide(C)101030..39414  bpPrimer
HQ9955812Dinucleotide(CA)1224346..369414  bpPrimer
HQ9956161Dinucleotide(CA)918248..265519  bpPrimer
 
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