Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Heteropneustes fossilis [18]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
GU5637291Mononucleotide(T)121260..71238  bpPrimer
GU5637321Dinucleotide(AC)61221..32521  bpPrimer
GU5637322Dinucleotide(AC)61237..48521  bpPrimer
GU5637323Mononucleotide(C)1212157..168521  bpPrimer
GU5637371Dinucleotide(GT)153047..76181  bpPrimer
GU5637372Dinucleotide(GT)61285..96181  bpPrimer
GU5637373Dinucleotide(TG)81698..113181  bpPrimer
GU5637361Dinucleotide(GT)153033..62205  bpPrimer
GU5637362Dinucleotide(GT)61271..82205  bpPrimer
GU5637363Dinucleotide(TG)81684..99205  bpPrimer
GU5637301Mononucleotide(A)101069..78612  bpPrimer
GU5637302Dinucleotide(CA)816416..431612  bpPrimer
GU5637311Dinucleotide(AC)102055..74201  bpPrimer
GU5637312Mononucleotide(A)1313111..123201  bpPrimer
GU5637331Mononucleotide(A)323274..105244  bpPrimer
GU5637332Dinucleotide(CA)612172..183244  bpPrimer
AY1966051Dinucleotide(CT)102041..60123  bpPrimer
AY1965921Dinucleotide(CT)102041..60125  bpPrimer
AY1965611Trinucleotide(GGA)51525..39130  bpPrimer
AY1965621Trinucleotide(GGA)61825..42133  bpPrimer
AY1965911Dinucleotide(CT)91841..58119  bpPrimer
AY1965501Mononucleotide(A)121272..83311  bpPrimer
 
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