Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Channa striata [112]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
GU3216761Dinucleotide(GT)173438..71250  bpPrimer
JQ3018011Dinucleotide(GA)71416..29572  bpPrimer
JQ3018012Dinucleotide(AC)612365..376572  bpPrimer
JQ3018013Dinucleotide(TC)714552..565572  bpPrimer
GQ1302121Mononucleotide(A)1111921..9311193  bpPrimer
FJ2329721Trinucleotide(CTC)51511..251020  bpPrimer
FJ2329722Mononucleotide(A)1111137..1471020  bpPrimer
FJ2329723Trinucleotide(AGA)618474..4911020  bpPrimer
GQ1302071Mononucleotide(C)1313543..555804  bpPrimer
GQ8531351Tetranucleotide(GATA)5208..27809  bpPrimer
GQ8531352Tetranucleotide(ATCT)520782..801809  bpPrimer
GU3232771Trinucleotide(CCG)61811..28291  bpPrimer
GU3232772Trinucleotide(CGG)618247..264291  bpPrimer
HM0263521Dinucleotide(CT)12248..31434  bpPrimer
HM0263522Dinucleotide(AG)1020408..427434  bpPrimer
GU3216791Dinucleotide(AC)1326217..242300  bpPrimer
FJ2329771Trinucleotide(CCT)5159..23972  bpPrimer
GQ8531471Dinucleotide(TC)7149..22812  bpPrimer
GQ8531472Dinucleotide(GA)1530175..204812  bpPrimer
GQ8531473Dinucleotide(AG)612792..803812  bpPrimer
HQ4141921Dinucleotide(AC)204069..108161  bpPrimer
HQ4141922Dinucleotide(AC)816111..126161  bpPrimer
GQ1302151Trinucleotide(ATC)51510..24824  bpPrimer
GQ1302152Dinucleotide(GT)918694..711824  bpPrimer
GQ1302153Trinucleotide(ATG)515799..813824  bpPrimer
GU3232631Trinucleotide(AAG)82413..36926  bpPrimer
GU3232632Dinucleotide(GT)1326204..229926  bpPrimer
GU3232633Dinucleotide(TG)1632260..291926  bpPrimer
GU3232634Dinucleotide(GT)1020907..926926  bpPrimer
FJ2329681Trinucleotide(CTC)51511..251033  bpPrimer
FJ2329682Trinucleotide(AGG)515938..9521033  bpPrimer
JQ3018021Dinucleotide(GA)71415..28791  bpPrimer
JQ3018022Dinucleotide(AC)816145..160791  bpPrimer
JQ3018023Dinucleotide(CT)918766..783791  bpPrimer
GU3232761Trinucleotide(CCG)82411..34954  bpPrimer
GQ8531391Tetranucleotide(GATA)5208..27359  bpPrimer
GQ8531392Tetranucleotide(CTAT)520332..351359  bpPrimer
FJ2329761Trinucleotide(CTC)51511..251035  bpPrimer
FJ2329762Dinucleotide(GA)91864..811035  bpPrimer
FJ2329763Dinucleotide(GA)612116..1271035  bpPrimer
HM0263501Dinucleotide(CT)11228..29432  bpPrimer
HM0263502Dinucleotide(AG)1020407..426432  bpPrimer
GQ1302191Dinucleotide(CA)1224291..3141006  bpPrimer
GQ1302192c*(GCAC)5(CA)6*29316..3441006  bpPrimer
GQ1302193Dinucleotide(TG)2652432..4831006  bpPrimer
GQ1302131Mononucleotide(A)1111921..9311215  bpPrimer
GQ1302411Trinucleotide(CTC)51511..25415  bpPrimer
GQ1302412Mononucleotide(T)1010238..247415  bpPrimer
GQ1302413Trinucleotide(AGG)618389..406415  bpPrimer
HM0263591Dinucleotide(GA)10208..27250  bpPrimer
HM0263592Dinucleotide(CT)1020224..243250  bpPrimer
HQ4141881Dinucleotide(TG)122425..48113  bpPrimer
GU3216781Dinucleotide(GT)163234..65101  bpPrimer
HQ9930851Dinucleotide(AC)816128..143216  bpPrimer
HQ4141871Dinucleotide(TG)122481..104174  bpPrimer
HQ4141872Dinucleotide(GT)612106..117174  bpPrimer
GQ1302111Mononucleotide(G)1111940..9501175  bpPrimer
GQ1302112Mononucleotide(C)11111100..11101175  bpPrimer
GQ8531491Dinucleotide(TC)7149..22901  bpPrimer
GQ8531492Dinucleotide(AC)71425..38901  bpPrimer
GQ8531493Dinucleotide(AG)612881..892901  bpPrimer
GQ1302161Dinucleotide(TG)612646..6571128  bpPrimer
GU3232731Trinucleotide(CCG)61811..28736  bpPrimer
GU3232732Mononucleotide(T)1717522..538736  bpPrimer
GU3232733Trinucleotide(CGG)515712..726736  bpPrimer
GU3216811Dinucleotide(CA)1020114..133153  bpPrimer
GU3232681Dinucleotide(GT)714583..5961048  bpPrimer
HM0263561Dinucleotide(AG)11224..25279  bpPrimer
HM0263562Dinucleotide(TC)1122250..271279  bpPrimer
GQ1302141Trinucleotide(ATC)51510..241138  bpPrimer
GQ1302142Dinucleotide(CA)1632562..5931138  bpPrimer
GQ1302143Mononucleotide(A)1111836..8461138  bpPrimer
GU3216751Dinucleotide(GT)112272..93123  bpPrimer
GQ8531461Dinucleotide(TC)6128..19807  bpPrimer
GQ8531462Dinucleotide(CT)1326607..632807  bpPrimer
GQ8531463Dinucleotide(GA)714786..799807  bpPrimer
HM0263531Dinucleotide(AG)12248..31259  bpPrimer
HM0263532Dinucleotide(TC)1632226..257259  bpPrimer
FJ2329651Trinucleotide(CTC)51511..25512  bpPrimer
FJ2329652Trinucleotide(GGA)515492..506512  bpPrimer
GQ1302381Trinucleotide(CCT)51510..24336  bpPrimer
GQ1302382Trinucleotide(GAG)515312..326336  bpPrimer
HM0263511Dinucleotide(CT)10208..27488  bpPrimer
HM0263512Composite(TG)12(AG)1044438..481488  bpPrimer
GU3216821Dinucleotide(GT)61278..89171  bpPrimer
GU3216822Dinucleotide(GT)81692..107171  bpPrimer
GQ8531401Tetranucleotide(GATA)5208..27398  bpPrimer
GQ8531402Tetranucleotide(ATCT)520369..388398  bpPrimer
GU3232751Trinucleotide(CCG)61812..291015  bpPrimer
GU3232752Trinucleotide(CGG)618926..9431015  bpPrimer
HM0263571Dinucleotide(GA)10201..20414  bpPrimer
HM0263572Dinucleotide(TG)1428385..412414  bpPrimer
GQ1302181Trinucleotide(ATC)51510..241173  bpPrimer
GQ1302182Dinucleotide(CA)714440..4531173  bpPrimer
GU3232621Mononucleotide(T)12121..12413  bpPrimer
GU3232721Trinucleotide(CCG)61811..28801  bpPrimer
HQ4141911Dinucleotide(CA)142883..110153  bpPrimer
HM0263551Dinucleotide(GA)10204..23263  bpPrimer
HM0263552Dinucleotide(TC)1122236..257263  bpPrimer
FJ2329701Trinucleotide(CTC)51511..25994  bpPrimer
GQ8531441Dinucleotide(TC)6129..20942  bpPrimer
GQ8531442Mononucleotide(T)1111307..317942  bpPrimer
GQ8531443Dinucleotide(GA)714921..934942  bpPrimer
FJ2329671Trinucleotide(CTC)51511..25502  bpPrimer
HM0263481Dinucleotide(CT)10208..27321  bpPrimer
HM0263482Dinucleotide(GT)1530258..287321  bpPrimer
HM0263483Dinucleotide(GA)1020294..313321  bpPrimer
HQ4141941Dinucleotide(GT)91878..95139  bpPrimer
GQ8531421Tetranucleotide(GATA)6248..311035  bpPrimer
GQ8531422Trinucleotide(ACT)515294..3081035  bpPrimer
GQ8531511Dinucleotide(TC)6129..20874  bpPrimer
GQ8531512Dinucleotide(AG)612854..865874  bpPrimer
GU3216771Dinucleotide(TG)1326133..158181  bpPrimer
FJ2329751Trinucleotide(CTC)51511..25494  bpPrimer
FJ2329752Mononucleotide(T)2323150..172494  bpPrimer
FJ2329753Dinucleotide(AC)612316..327494  bpPrimer
FJ2329754Trinucleotide(GAG)515470..484494  bpPrimer
FJ2329741Trinucleotide(CTC)51511..251039  bpPrimer
FJ2329742Dinucleotide(AG)612472..4831039  bpPrimer
HM0263541Dinucleotide(AG)11229..30381  bpPrimer
HM0263542Dinucleotide(CT)1122357..378381  bpPrimer
HQ4141891Dinucleotide(TG)142835..62111  bpPrimer
GQ1302171Trinucleotide(ATC)51510..241190  bpPrimer
GQ1302172Dinucleotide(AC)1020190..2091190  bpPrimer
GQ1302173Dinucleotide(AC)2550651..7001190  bpPrimer
GQ1302174c*(TG)6(GTGC)5*29790..8181190  bpPrimer
GQ1302175Dinucleotide(TG)1224820..8431190  bpPrimer
GU3216801Dinucleotide(TG)1632108..139244  bpPrimer
FJ2329731Trinucleotide(CCT)51510..24778  bpPrimer
FJ2329732Trinucleotide(GAG)515742..756778  bpPrimer
GQ1302331Trinucleotide(GTT)51510..241094  bpPrimer
GQ1302332Dinucleotide(TG)1224935..9581094  bpPrimer
GQ1302361Mononucleotide(A)1212102..1131015  bpPrimer
GQ1302362Trinucleotide(AGA)618440..4571015  bpPrimer
GQ8531501Dinucleotide(TC)13269..34586  bpPrimer
GQ8531502Dinucleotide(GA)714565..578586  bpPrimer
GU3232691Trinucleotide(GAA)61815..32418  bpPrimer
GU3232711Trinucleotide(CCG)6182..191019  bpPrimer
GU3232712Trinucleotide(CGG)618971..9881019  bpPrimer
GU3232781Trinucleotide(GCC)51535..491088  bpPrimer
GQ1302321Trinucleotide(TTG)61819..36843  bpPrimer
GQ1302322Trinucleotide(AAC)515822..836843  bpPrimer
GQ8531361Tetranucleotide(GATA)5208..27782  bpPrimer
GQ8531381Tetranucleotide(GATA)5208..27409  bpPrimer
GQ8531382Tetranucleotide(TATC)520383..402409  bpPrimer
GU3232701Trinucleotide(CCG)61825..42529  bpPrimer
GU3232702Trinucleotide(CGG)515502..516529  bpPrimer
GQ1302391Trinucleotide(CTC)51511..251013  bpPrimer
GQ1302392Dinucleotide(AC)1224154..1771013  bpPrimer
GU3232741Trinucleotide(CCG)61811..281000  bpPrimer
GU3232742Mononucleotide(T)1111399..4091000  bpPrimer
GU3232743Dinucleotide(TG)1020487..5061000  bpPrimer
GQ8531341Tetranucleotide(GATA)5208..27557  bpPrimer
GQ8531342Tetranucleotide(CTAT)520530..549557  bpPrimer
FJ2329691Trinucleotide(CTC)51511..251002  bpPrimer
HM0263581Dinucleotide(GA)11224..25603  bpPrimer
HM0263582Dinucleotide(CT)1020577..596603  bpPrimer
GQ1302341Trinucleotide(TTG)5158..221050  bpPrimer
GQ1302342Dinucleotide(TG)918853..8701050  bpPrimer
HQ4141901Dinucleotide(CA)153065..94158  bpPrimer
GQ1302091Mononucleotide(A)141468..811043  bpPrimer
GQ1302092Mononucleotide(A)1313919..9311043  bpPrimer
GQ1302081Trinucleotide(CAG)5159..23379  bpPrimer
GQ1302082Mononucleotide(T)1313290..302379  bpPrimer
GQ1302083Trinucleotide(GCT)515356..370379  bpPrimer
HM0263601Dinucleotide(AG)12249..32248  bpPrimer
HM0263602Dinucleotide(CT)1020228..247248  bpPrimer
HQ4141931Dinucleotide(GT)142853..80150  bpPrimer
FJ2329661Trinucleotide(CCT)51532..461038  bpPrimer
FJ2329662Mononucleotide(A)1010153..1621038  bpPrimer
GU3232641Trinucleotide(AAG)51513..27406  bpPrimer
GQ1302401Trinucleotide(CTC)51511..251039  bpPrimer
GQ1302371Trinucleotide(CTC)51511..251027  bpPrimer
GQ1302372Dinucleotide(GA)81664..791027  bpPrimer
GQ1302373Dinucleotide(GA)612114..1251027  bpPrimer
GQ8531451Dinucleotide(TC)11229..30606  bpPrimer
GQ8531452Dinucleotide(AC)61233..44606  bpPrimer
GQ8531453Dinucleotide(CA)102046..65606  bpPrimer
GQ8531454Dinucleotide(AG)612586..597606  bpPrimer
FJ2329711Trinucleotide(CCT)51510..241001  bpPrimer
FJ2329712Dinucleotide(AG)612937..9481001  bpPrimer
GQ1302351Trinucleotide(CTC)51511..251037  bpPrimer
HM0263491Dinucleotide(CT)10208..27344  bpPrimer
HM0263492Trinucleotide(CTC)824283..306344  bpPrimer
HM0263493Dinucleotide(AG)1224314..337344  bpPrimer
GQ8531371Tetranucleotide(GATA)6248..311052  bpPrimer
GQ1302421Trinucleotide(CCT)51510..24331  bpPrimer
GQ1302422Trinucleotide(GAG)515312..326331  bpPrimer
GQ8531481Dinucleotide(TC)6128..19302  bpPrimer
GQ8531482Dinucleotide(GA)714281..294302  bpPrimer
JQ3018001Dinucleotide(GA)81616..31462  bpPrimer
JQ3018002Dinucleotide(TC)1122434..455462  bpPrimer
GQ8531431Tetranucleotide(GATA)6248..311043  bpPrimer
GQ8531432Mononucleotide(A)1010481..4901043  bpPrimer
GQ8531433Tetranucleotide(TATC)6241005..10281043  bpPrimer
JQ3018031Dinucleotide(GA)71416..29700  bpPrimer
HM0263491Dinucleotide(CT)10208..27344  bpPrimer
HM0263492Trinucleotide(CTC)824283..306344  bpPrimer
HM0263493Dinucleotide(AG)1224314..337344  bpPrimer
JQ3018031Dinucleotide(GA)71416..29700  bpPrimer
JQ3018001Dinucleotide(GA)81616..31462  bpPrimer
JQ3018002Dinucleotide(TC)1122434..455462  bpPrimer
JQ3018021Dinucleotide(GA)71415..28791  bpPrimer
JQ3018022Dinucleotide(AC)816145..160791  bpPrimer
JQ3018023Dinucleotide(CT)918766..783791  bpPrimer
HM0263481Dinucleotide(CT)10208..27321  bpPrimer
HM0263482Dinucleotide(GT)1530258..287321  bpPrimer
HM0263483Dinucleotide(GA)1020294..313321  bpPrimer
JQ3018011Dinucleotide(GA)71416..29572  bpPrimer
JQ3018012Dinucleotide(AC)612365..376572  bpPrimer
JQ3018013Dinucleotide(TC)714552..565572  bpPrimer
 
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