Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Chaetodon vagabundus [26]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
GQ2814381Dinucleotide(AG)2652152..203483  bpPrimer
GQ2814401Tetranucleotide(TCTG)624440..463557  bpPrimer
GQ2814411Tetranucleotide(ACAG)832334..365553  bpPrimer
GQ2814451Tetranucleotide(TCTA)1560216..275473  bpPrimer
GQ2814481Tetranucleotide(ATCT)728221..248423  bpPrimer
GQ2814501Tetranucleotide(ATAG)1560271..330505  bpPrimer
GQ2814502Tetranucleotide(TAGA)1352332..383505  bpPrimer
GQ2814371Dinucleotide(CA)163281..112450  bpPrimer
GQ2814372Dinucleotide(AC)2550200..249450  bpPrimer
GQ2814373Dinucleotide(AC)2142329..370450  bpPrimer
GQ2814391Dinucleotide(CT)1530193..222491  bpPrimer
GQ2814511Tetranucleotide(AGAT)1456127..182419  bpPrimer
GQ2814421Tetranucleotide(ATCT)1872178..249473  bpPrimer
GQ2814431Tetranucleotide(ATCT)93682..117441  bpPrimer
GQ2814432Dinucleotide(AC)2244302..345441  bpPrimer
GQ2814491Tetranucleotide(TCTA)1040284..323457  bpPrimer
GQ2814471Tetranucleotide(TCTA)124888..135575  bpPrimer
GQ2814461Dinucleotide(TG)7147..20482  bpPrimer
GQ2814462Trinucleotide(CAC)51598..112482  bpPrimer
GQ2814463Tetranucleotide(AGAT)1872270..341482  bpPrimer
GQ2814441Tetranucleotide(TAGA)93625..60493  bpPrimer
KP7930721Dinucleotide(AC)91895..112257  bpPrimer
KP7930722Dinucleotide(GT)3468190..257257  bpPrimer
KP7930701Dinucleotide(TG)142875..102176  bpPrimer
KP7930681Dinucleotide(TG)1224248..271326  bpPrimer
KP7930631Dinucleotide(CA)1326178..203359  bpPrimer
KP7930641Dinucleotide(AC)204082..121339  bpPrimer
KP7930642Dinucleotide(GT)1428262..289339  bpPrimer
KP7930643Dinucleotide(GT)2448292..339339  bpPrimer
KP7930731Dinucleotide(AC)1224140..163220  bpPrimer
KP7930671Dinucleotide(TG)1326228..253295  bpPrimer
KP7930661Dinucleotide(GT)153080..109242  bpPrimer
KP7930711Dinucleotide(AC)1224108..131225  bpPrimer
KP7930651Tetranucleotide(GACA)72837..64492  bpPrimer
KP7930691Dinucleotide(GT)1632100..131379  bpPrimer
 
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