Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Chaetodon punctatofasciatus [20]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KC6997471Tetranucleotide(TCTG)1352232..283483  bpPrimer
KC6997401Trinucleotide(GTT)1133290..322439  bpPrimer
KC6997381Trinucleotide(GAG)113331..63443  bpPrimer
KC6997461Tetranucleotide(CTGT)1248195..242407  bpPrimer
KC6997351Trinucleotide(GTT)824199..222457  bpPrimer
KC6997361Trinucleotide(AGG)92719..45214  bpPrimer
KC6997362Trinucleotide(GAG)1133148..180214  bpPrimer
KC6997451Tetranucleotide(ATGG)1040152..191405  bpPrimer
KC6997341Trinucleotide(GGA)824118..141430  bpPrimer
KC6997481Tetranucleotide(TGGA)1352280..331464  bpPrimer
KC6997431Trinucleotide(TCT)144281..122444  bpPrimer
KC6997421Trinucleotide(GAG)1339307..345435  bpPrimer
KC6997491Pentanucleotide(GACGT)1050183..232394  bpPrimer
KC6997411Trinucleotide(GGA)123697..132420  bpPrimer
KC6997501Pentanucleotide(AGGAC)115555..109355  bpPrimer
KC6997331Trinucleotide(CAA)824284..307379  bpPrimer
KC6997391Trinucleotide(CAT)1133204..236448  bpPrimer
KC6997371Trinucleotide(GAG)1133135..167466  bpPrimer
KC6997511Pentanucleotide(AGAGG)147055..124431  bpPrimer
KC6997321Trinucleotide(TCA)824362..385437  bpPrimer
KC6997441Trinucleotide(TAT)1339336..374434  bpPrimer
 
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