Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Carassius carassius [57]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
FJ3604831Dinucleotide(AC)918266..283443  bpPrimer
FJ3604531Mononucleotide(A)111156..66734  bpPrimer
FJ3604532Dinucleotide(CA)1428112..139734  bpPrimer
FJ3604533Mononucleotide(A)1414705..718734  bpPrimer
FJ3604821Dinucleotide(AC)714247..260782  bpPrimer
FJ3604911Composite(CT)15(CA)1458239..296532  bpPrimer
FJ3604901Dinucleotide(CA)1326500..525614  bpPrimer
FJ3604751Dinucleotide(AC)1122223..244533  bpPrimer
FJ3604501Dinucleotide(AC)1836342..377500  bpPrimer
FJ3604502Dinucleotide(CA)1326411..436500  bpPrimer
FJ3604503Dinucleotide(AC)918438..455500  bpPrimer
FJ3604891Dinucleotide(CA)1938182..219473  bpPrimer
FJ3604611Dinucleotide(CA)1428238..265481  bpPrimer
FJ3604731Dinucleotide(AC)918147..164368  bpPrimer
FJ3604641Dinucleotide(AC)1224210..233506  bpPrimer
FJ3604671Dinucleotide(AC)61211..22379  bpPrimer
FJ3604672Dinucleotide(CA)918293..310379  bpPrimer
FJ3604721Dinucleotide(CA)1632126..157360  bpPrimer
FJ3604561Dinucleotide(AC)1122218..239442  bpPrimer
FJ3604601Dinucleotide(TG)1326249..274595  bpPrimer
FJ3604511Dinucleotide(AC)2652250..301609  bpPrimer
FJ3604541Dinucleotide(AC)816185..200509  bpPrimer
FJ3604691Dinucleotide(AC)1836112..147312  bpPrimer
FJ3604591Composite(CA)14(GA)844266..309500  bpPrimer
FJ3604741Dinucleotide(CT)1326169..194637  bpPrimer
FJ3604742Dinucleotide(AC)1530206..235637  bpPrimer
FJ3604631Dinucleotide(CA)1020268..287431  bpPrimer
FJ3604571Dinucleotide(CA)81686..101550  bpPrimer
FJ3604572Dinucleotide(AC)816328..343550  bpPrimer
FJ3604681Dinucleotide(TG)918312..329463  bpPrimer
FJ3604521Dinucleotide(CA)1530195..224345  bpPrimer
FJ3604871Dinucleotide(CA)714178..191617  bpPrimer
FJ3604781Dinucleotide(AC)1530189..218388  bpPrimer
FJ3604782Dinucleotide(AC)1020221..240388  bpPrimer
FJ3604783Dinucleotide(CA)612358..369388  bpPrimer
FJ3604841Dinucleotide(GT)612201..212783  bpPrimer
FJ3604842Dinucleotide(AC)714260..273783  bpPrimer
FJ3604711Dinucleotide(TG)918117..134540  bpPrimer
FJ3604811Dinucleotide(AC)1326180..205471  bpPrimer
FJ3604661Dinucleotide(AC)112278..99261  bpPrimer
FJ3604791Dinucleotide(AC)816125..140328  bpPrimer
FJ3604551Dinucleotide(CA)2040105..144359  bpPrimer
FJ3604801Dinucleotide(AG)612341..352588  bpPrimer
FJ3604802Dinucleotide(CA)918407..424588  bpPrimer
FJ3604491Dinucleotide(AC)102054..73328  bpPrimer
FJ3604492Dinucleotide(CA)612106..117328  bpPrimer
FJ3604701Dinucleotide(TG)1836139..174377  bpPrimer
FJ3604771Dinucleotide(TG)816172..187457  bpPrimer
FJ3604651Dinucleotide(AT)91869..86600  bpPrimer
FJ3604652Dinucleotide(CA)2040216..255600  bpPrimer
FJ3604653Dinucleotide(AC)816263..278600  bpPrimer
FJ3604861Dinucleotide(AC)1428129..156359  bpPrimer
FJ3604862Mononucleotide(A)1111324..334359  bpPrimer
FJ3604581Dinucleotide(CA)71477..90458  bpPrimer
FJ3604582Dinucleotide(AC)1836133..168458  bpPrimer
FJ3604583Dinucleotide(AC)1326266..291458  bpPrimer
FJ3604621Dinucleotide(AC)1734127..160392  bpPrimer
FJ3604761Dinucleotide(GT)612327..338689  bpPrimer
FJ3604762Mononucleotide(T)1313622..634689  bpPrimer
 
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