Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Bostrychus sinensis [20]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JN8061191Dinucleotide(TG)61240..51706  bpPrimer
JN8061192Dinucleotide(GT)132653..78706  bpPrimer
JN8061261Mononucleotide(T)101044..53534  bpPrimer
JN8061262Dinucleotide(GT)3570368..437534  bpPrimer
JN8061351Trinucleotide(ACT)1854447..500866  bpPrimer
JN8061352Dinucleotide(TG)1224667..690866  bpPrimer
JN8061353Dinucleotide(TG)3060693..752866  bpPrimer
JN8061161Dinucleotide(CA)61122277..398792  bpPrimer
JN8061341Dinucleotide(TG)1938116..153807  bpPrimer
JN8061321Dinucleotide(CA)61259..70661  bpPrimer
JN8061322Dinucleotide(CA)357077..146661  bpPrimer
JN8061301Dinucleotide(GT)3774460..533806  bpPrimer
JN8061302Dinucleotide(TG)1734535..568806  bpPrimer
JN8061211Dinucleotide(AC)1632322..353440  bpPrimer
JN8061271Dinucleotide(GT)3366145..210410  bpPrimer
JN8061181Dinucleotide(TG)234692..137383  bpPrimer
JN8061171Dinucleotide(AC)1938469..506572  bpPrimer
JN8061311Dinucleotide(CA)816251..266579  bpPrimer
JN8061312Trinucleotide(GAG)721302..322579  bpPrimer
JN8061313Dinucleotide(AC)50100379..478579  bpPrimer
JN8061331Dinucleotide(GT)4896274..369484  bpPrimer
JN8061201Dinucleotide(CT)612407..418588  bpPrimer
JN8061202Dinucleotide(AC)70140422..561588  bpPrimer
JN8061241Dinucleotide(TG)1632464..495549  bpPrimer
JN8061251Dinucleotide(GT)2550256..305601  bpPrimer
JN8061291Dinucleotide(GT)3570271..340558  bpPrimer
JN8061221Dinucleotide(TG)4386182..267369  bpPrimer
JN8061231Dinucleotide(TG)387631..106364  bpPrimer
JN8061281Dinucleotide(CA)214277..118482  bpPrimer
JN8061282Dinucleotide(AC)918120..137482  bpPrimer
 
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