Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Beryx splendens [40]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB6619211Dinucleotide(TG)28561..5695  bpPrimer
AB6620931Dinucleotide(TG)91856..73121  bpPrimer
AB4345431Dinucleotide(CA)1224106..129218  bpPrimer
AB6620101Dinucleotide(CA)8161..16298  bpPrimer
AB6619661Dinucleotide(AC)14281..28179  bpPrimer
AB6627821Dinucleotide(AC)142825..5253  bpPrimer
AB6625591Composite(CT)15(CA)74487..130130  bpPrimer
AB6622441Dinucleotide(CT)81639..54190  bpPrimer
AB6622442Dinucleotide(CT)61257..68190  bpPrimer
AB6622443Dinucleotide(CA)5410883..190190  bpPrimer
AB6619891Dinucleotide(CA)102012..3164  bpPrimer
AB6619892Dinucleotide(CA)153034..6364  bpPrimer
AB6620471Dinucleotide(AC)48961..96135  bpPrimer
AB6625811Dinucleotide(CT)15301..30103  bpPrimer
AB6625812Dinucleotide(TC)71467..80103  bpPrimer
AB4345401Dinucleotide(TG)1224117..140174  bpPrimer
AB6625321Dinucleotide(AC)9189..2675  bpPrimer
AB6625322Dinucleotide(CA)244828..7575  bpPrimer
AB4345441Dinucleotide(CA)4182129..210553  bpPrimer
AB4345442Dinucleotide(AG)918226..243553  bpPrimer
AB6626451Dinucleotide(CA)81657..7273  bpPrimer
AB6621981Dinucleotide(CA)10201..2039  bpPrimer
AB6622681Dinucleotide(CA)61267..78202  bpPrimer
AB6622682Dinucleotide(AC)816138..153202  bpPrimer
AB6623631Dinucleotide(CA)163211..4280  bpPrimer
AB6628311Dinucleotide(CA)91814..3177  bpPrimer
AB6628312Dinucleotide(CA)112234..5577  bpPrimer
AB6624571Dinucleotide(CT)204066..105106  bpPrimer
AB6626871Dinucleotide(TG)81659..7488  bpPrimer
AB6622901Dinucleotide(CA)8162..1728  bpPrimer
AB6620721Dinucleotide(GT)12241..2482  bpPrimer
AB4345411Tetranucleotide(AATG)62461..84219  bpPrimer
AB6621551Dinucleotide(CA)49981..98144  bpPrimer
AB6626011Dinucleotide(CA)35701..70100  bpPrimer
AB6628071Dinucleotide(AC)61229..40148  bpPrimer
AB6618801Dinucleotide(AC)1122223..244304  bpPrimer
AB6624291Dinucleotide(CA)7141..1425  bpPrimer
AB6626671Composite(CA)17(CT)7481..48150  bpPrimer
AB6626672Dinucleotide(CA)102093..112150  bpPrimer
AB6625101Dinucleotide(GT)81635..5050  bpPrimer
AB6627371Dinucleotide(CA)16321..3252  bpPrimer
AB4345421Dinucleotide(AC)1836259..294388  bpPrimer
AB4345381Dinucleotide(AG)244851..98147  bpPrimer
AB6622221Dinucleotide(AC)102040..59137  bpPrimer
AB6623281Dinucleotide(CA)1836135..170170  bpPrimer
AB4345391Dinucleotide(GT)1530250..279375  bpPrimer
AB6621771Dinucleotide(TG)489637..132133  bpPrimer
AB6624851Dinucleotide(TG)19381..3898  bpPrimer
 
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